C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Transcript Info
Description: CCR4-NOT transcription complex, subunit 4
Transcript Accession Transcript Name Contained in Gene Tax ID Strand Position Biotype
ENST00000451834 CNOT4-003 ENSG00000080802 9606 - 7:135361795-135510080 protein_coding

Expression Patterns

Heat Map
Numeric Values
Transcript'; AdiposeBrainColonHeartKidneyLiverLungOvaryPlacentaTestisENST00000451834
Transcript ID Adipose Brain Colon Heart Kidney Liver Lung Ovary Placenta Testis
ENST00000451834 1.474±0.00 1.492±0.00 1.821±0.62 1.489±0.87 2.138±1.12 0.653±0.00 2.182±0.00 1.921±0.26 1.918±0.61 5.229±0.44

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_0002H2 CIL_0002H2_0001 CGP 7:135361795-135648757

Gene Ontology

GO IDEvidence TypeGO Description
GO:0000166 IEA nucleotide binding
GO:0000288 TAS nuclear-transcribed mRNA catabolic process, deadenylation-dependent decay
GO:0000289 TAS nuclear-transcribed mRNA poly(A) tail shortening
GO:0003676 IEA nucleic acid binding
GO:0004842 IDA ubiquitin-protein transferase activity
GO:0005515 IPI:IEA protein binding
GO:0005634 IEA nucleus
GO:0005829 TAS cytosol
GO:0008270 IEA zinc ion binding
GO:0010467 TAS gene expression
GO:0016070 TAS RNA metabolic process
GO:0016071 TAS mRNA metabolic process
GO:0016874 IEA ligase activity
GO:0030014 IDA CCR4-NOT complex
GO:0044822 IDA poly(A) RNA binding
GO:0051865 IDA protein autoubiquitination

Homologs

ENSEMBL Accession Gene Name Biotype Species E-Value Bit Score
ENSMUST00000114993 Cnot4-203 protein_coding Mus_musculus 0 4761
ENSMUST00000044163 Cnot4-201 protein_coding Mus_musculus 0 2850
ENSMUST00000114989 Cnot4-202 protein_coding Mus_musculus 0 2850
ENSDART00000034714 CNOT4 (1 of 2)-201 protein_coding Danio_rerio 8e-39 167
ENSDART00000022646 CNOT4 (2 of 2)-001 protein_coding Danio_rerio 5e-31 141

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