C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Transcript Info
Description: ribulose-5-phosphate-3-epimerase
Transcript Accession Transcript Name Contained in Gene Tax ID Strand Position Biotype
ENST00000452025 RPE-012 ENSG00000197713 9606 + 2:210002643-210019766 protein_coding

Homo sapiens EnsemblGRCh38

Genome
Exciting message
Genes
Structures from Ensembl
Connecting
Transcripts
Structures from Ensembl
Connecting
Powered by Dalliance 0.11.11

Expression Patterns

No expression data.

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_0006P1 CIL_0006P1_0001 CGP 2:209771993-210022259
CIL_0006P6 CIL_0006P6_0001 CGP 2:210002565-210171383

Gene Ontology

GO IDEvidence TypeGO Description
GO:0003824 IEA catalytic activity
GO:0004750 IEA ribulose-phosphate 3-epimerase activity
GO:0005975 IEA carbohydrate metabolic process
GO:0006098 IEA pentose-phosphate shunt
GO:0008152 IEA metabolic process
GO:0016857 IEA racemase and epimerase activity, acting on carbohydrates and derivatives
GO:0046872 IEA metal ion binding

Homologs

ENSEMBL Accession Gene Name Biotype Species E-Value Bit Score
ENSMUST00000027157 Rpe-001 protein_coding Mus_musculus 0 798
ENSMUST00000113995 Rpe-002 protein_coding Mus_musculus 0 689
ENSMUST00000142920 Rpe-003 nonsense_mediated_decay Mus_musculus 0 634
ENSMUST00000190404 Rpe-005 nonsense_mediated_decay Mus_musculus 0 510
ENSMUST00000151016 Rpe-004 nonsense_mediated_decay Mus_musculus 2e-39 167
ENSMUST00000034431 Tmem170-201 protein_coding Mus_musculus 0.0000003 60
ENSMUST00000173269 Neu1-002 retained_intron Mus_musculus 0.000001 58

Loading