C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Transcript Info
Description: ribulose-5-phosphate-3-epimerase
Transcript Accession Transcript Name Contained in Gene Tax ID Strand Position Biotype
ENSMUST00000113995 Rpe-002 ENSMUSG00000026005 10090 + 1:66700831-66719805 protein_coding

Mus musculus EnsemblGRCm38

Genome
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Genes
Structures from Ensembl
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Transcripts
Structures from Ensembl
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Expression Patterns

Heat Map
Numeric Values
Transcript'; AdiposeAdrenalBreastColonLiverOvaryENSMUST00000113995
Transcript ID Adipose Adrenal Breast Colon Liver Ovary
ENSMUST00000113995 3.925±0.71 7.843±0.58 1.894±0.00 2.500±0.48 2.563±0.05 3.583±1.31

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_0006P1 CIL_0006P1_0002 CGP 1:66468367-66719805
CIL_0006P6 CIL_0006P6_0002 CGP 1:66700831-66817562

Gene Ontology

GO IDEvidence TypeGO Description
GO:0004750 IEA ribulose-phosphate 3-epimerase activity
GO:0006098 IEA pentose-phosphate shunt
GO:0046872 IEA metal ion binding

Homologs

ENSEMBL Accession Gene Name Biotype Species E-Value Bit Score
ENST00000281772 KANSL1L-001 protein_coding Homo_sapiens 0 322
ENST00000354506 RPE-201 protein_coding Homo_sapiens 0 588
ENST00000359429 RPE-001 protein_coding Homo_sapiens 0 976
ENST00000408981 RPE-010 protein_coding Homo_sapiens 0 891
ENST00000411934 RPE-005 protein_coding Homo_sapiens 0 773
ENST00000429907 RPE-011 protein_coding Homo_sapiens 0 689
ENST00000429921 RPE-003 protein_coding Homo_sapiens 0 582
ENST00000435437 RPE-004 protein_coding Homo_sapiens 0 931
ENST00000436630 RPE-008 protein_coding Homo_sapiens 0 577
ENST00000437636 RPEP4-001 processed_pseudogene Homo_sapiens 0 520
ENST00000438191 RPE-006 nonsense_mediated_decay Homo_sapiens 0 593
ENST00000438204 RPE-016 protein_coding Homo_sapiens 0 773
ENST00000438265 RPE-007 protein_coding Homo_sapiens 0 379
ENST00000441178 RPEL1-001 protein_coding Homo_sapiens 0 942
ENST00000441588 RPE-014 protein_coding Homo_sapiens 0 468
ENST00000445268 RPE-013 protein_coding Homo_sapiens 0 510
ENST00000452025 RPE-012 protein_coding Homo_sapiens 0 689
ENST00000453724 RPE-009 protein_coding Homo_sapiens 0 475
ENST00000454822 RPE-002 protein_coding Homo_sapiens 0 582

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