C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Transcript Info
Description: ribulose-5-phosphate-3-epimerase
Transcript Accession Transcript Name Contained in Gene Tax ID Strand Position Biotype
ENSMUST00000027157 Rpe-001 ENSMUSG00000026005 10090 + 1:66700831-66719805 protein_coding

Expression Patterns

Heat Map
Numeric Values
Transcript'; AdiposeAdrenalBladderBrainBreastColonHeartKidneyLiverLungMuscleOvaryPlacentaTestisENSMUST00000027157
Transcript ID Adipose Adrenal Bladder Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENSMUST00000027157 14.564±3.00 29.463±4.00 6.767±1.82 6.073±0.04 12.945±6.44 10.447±1.16 1.990±0.29 7.823±1.73 9.476±2.45 9.291±0.72 1.887±0.29 9.128±2.60 5.597±2.66 2.419±0.36

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_0006P1 CIL_0006P1_0002 CGP 1:66468367-66719805
CIL_0006P6 CIL_0006P6_0002 CGP 1:66700831-66817562

Gene Ontology

GO IDEvidence TypeGO Description
GO:0004750 ISS ribulose-phosphate 3-epimerase activity
GO:0005975 ISS carbohydrate metabolic process
GO:0006098 ISS pentose-phosphate shunt
GO:0009052 IEA pentose-phosphate shunt, non-oxidative branch
GO:0030246 IEA carbohydrate binding
GO:0043231 IEA intracellular membrane-bounded organelle
GO:0046872 ISS metal ion binding
GO:0048029 IEA monosaccharide binding

Homologs

ENSEMBL Accession Gene Name Biotype Species E-Value Bit Score
ENST00000281772 KANSL1L-001 protein_coding Homo_sapiens 0 322
ENST00000354506 RPE-201 protein_coding Homo_sapiens 0 695
ENST00000359429 RPE-001 protein_coding Homo_sapiens 0 1085
ENST00000408981 RPE-010 protein_coding Homo_sapiens 0 881
ENST00000411934 RPE-005 protein_coding Homo_sapiens 0 773
ENST00000429907 RPE-011 protein_coding Homo_sapiens 0 798
ENST00000429921 RPE-003 protein_coding Homo_sapiens 0 582
ENST00000435437 RPE-004 protein_coding Homo_sapiens 0 1040
ENST00000436630 RPE-008 protein_coding Homo_sapiens 0 577
ENST00000437636 RPEP4-001 processed_pseudogene Homo_sapiens 0 520
ENST00000438191 RPE-006 nonsense_mediated_decay Homo_sapiens 0 459
ENST00000438204 RPE-016 protein_coding Homo_sapiens 0 773
ENST00000438265 RPE-007 protein_coding Homo_sapiens 0 488
ENST00000441178 RPEL1-001 protein_coding Homo_sapiens 0 1051
ENST00000441588 RPE-014 protein_coding Homo_sapiens 0 468
ENST00000445268 RPE-013 protein_coding Homo_sapiens 0 510
ENST00000452025 RPE-012 protein_coding Homo_sapiens 0 798
ENST00000453724 RPE-009 protein_coding Homo_sapiens 0 324
ENST00000454822 RPE-002 protein_coding Homo_sapiens 0 582

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