C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Transcript Info
Description: synaptophysin-like 1
Transcript Accession Transcript Name Contained in Gene Tax ID Strand Position Biotype
ENST00000455385 SYPL1-002 ENSG00000008282 9606 - 7:106090503-106112331 protein_coding

Expression Patterns

Heat Map
Numeric Values
Transcript'; AdiposeAdrenalBladderBrainBreastColonHeartKidneyLiverLungMuscleOvaryPlacentaTestisENST00000455385
Transcript ID Adipose Adrenal Bladder Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENST00000455385 30.153±0.00 39.970±0.00 6.713±0.00 10.947±7.71 14.135±9.38 24.574±20.20 16.405±11.86 49.066±0.00 10.644±2.06 20.612±13.35 28.665±27.67 28.603±9.92 30.543±3.13 8.473±0.00

Conserved Regions

Gene is not located within a conserved region.

Gene Ontology

GO IDEvidence TypeGO Description
GO:0005215 IEA transporter activity
GO:0005887 TAS integral component of plasma membrane
GO:0006810 IEA transport
GO:0007268 TAS synaptic transmission
GO:0016020 IEA membrane
GO:0016021 TAS integral component of membrane
GO:0030285 IBA integral component of synaptic vesicle membrane
GO:0070062 IDA extracellular vesicular exosome

Homologs

ENSEMBL Accession Gene Name Biotype Species E-Value Bit Score
ENSMUST00000020885 Sypl-002 protein_coding Mus_musculus 0 1232
ENSMUST00000076698 Sypl-001 protein_coding Mus_musculus 0 1151
ENSMUST00000131562 Sypl-003 retained_intron Mus_musculus 0 315
ENSMUST00000122861 Sypl-005 nonsense_mediated_decay Mus_musculus 0 296
ENSMUST00000139339 Sypl-006 processed_transcript Mus_musculus 0 272
ENSMUST00000129592 Sypl-004 processed_transcript Mus_musculus 0 254

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