C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Transcript Info
Description: autophagy/beclin-1 regulator 1
Transcript Accession Transcript Name Contained in Gene Tax ID Strand Position Biotype
ENST00000458649 AMBRA1-005 ENSG00000110497 9606 - 11:46396415-46591423 protein_coding

Homo sapiens EnsemblGRCh38

Genome
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Genes
Structures from Ensembl
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Transcripts
Structures from Ensembl
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Expression Patterns

Heat Map
Numeric Values
Transcript'; BladderBrainBreastColonENST00000458649
Transcript ID Bladder Brain Breast Colon
ENST00000458649 0.427±0.00 2.211±0.00 2.011±0.00 1.039±0.00

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_0002LK CIL_0002LK_0002 CGP 11:46385098-46594125

Gene Ontology

GO IDEvidence TypeGO Description
GO:0005515 IPI:IEA protein binding
GO:0005737 IDA cytoplasm
GO:0005930 ISS axoneme
GO:0030154 IEA cell differentiation

Homologs

ENSEMBL Accession Gene Name Biotype Species E-Value Bit Score
ENSMUST00000045705 Ambra1-002 protein_coding Mus_musculus 0 5786
ENSMUST00000099712 Ambra1-001 protein_coding Mus_musculus 0 4150
ENSMUST00000156496 Ambra1-007 processed_transcript Mus_musculus 0 3559
ENSMUST00000111316 Ambra1-003 protein_coding Mus_musculus 0 3253
ENSMUST00000124132 Ambra1-005 processed_transcript Mus_musculus 0 3097
ENSMUST00000111317 Ambra1-201 protein_coding Mus_musculus 0 2540
ENSMUST00000045699 Ambra1-004 protein_coding Mus_musculus 0 2540
ENSMUST00000133490 Ambra1-006 processed_transcript Mus_musculus 0 837
ENSMUST00000142224 Ambra1-008 processed_transcript Mus_musculus 0 287

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