C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Transcript Info
Description: ribosomal protein L36a pseudogene 43
Transcript Accession Transcript Name Contained in Gene Tax ID Strand Position Biotype
ENST00000460165 RPL36AP43-001 ENSG00000241362 9606 - 15:89687937-89688243 processed_pseudogene

Expression Patterns

Heat Map
Numeric Values
Transcript'; AdiposeAdrenalBrainBreastColonHeartKidneyLiverLungMuscleOvaryPlacentaTestisENST00000460165
Transcript ID Adipose Adrenal Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENST00000460165 0.274±0.00 0.434±0.00 0.242±0.00 1.400±0.73 3.110±2.80 0.044±0.00 1.326±0.00 0.599±0.56 1.279±1.09 0.215±0.00 0.299±0.19 0.230±0.00 0.381±0.25

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_00006E CIL_00006E_0001 CGP 15:89664365-89690783
CIL_00005X CIL_00005X_0001 CGP 15:89677764-89743638

Gene Ontology

GO IDEvidence TypeGO Description
No GO terms available.

Homologs

ENSEMBL Accession Gene Name Biotype Species E-Value Bit Score
ENSMUST00000172023 Rpl36a-003 retained_intron Mus_musculus 0 340
ENSMUST00000113211 Rpl36a-001 protein_coding Mus_musculus 0 340
ENSMUST00000081987 Rpl36a-ps1-201 processed_pseudogene Mus_musculus 0 335
ENSMUST00000149857 Rpl36a-005 retained_intron Mus_musculus 0 335
ENSMUST00000170828 Rpl36a-004 nonsense_mediated_decay Mus_musculus 0 335
ENSMUST00000116105 Gm11970-001 processed_pseudogene Mus_musculus 0 316
ENSMUST00000152266 Rpl36a-002 retained_intron Mus_musculus 1e-37 159

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