C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Transcript Info
Description: ribosomal protein L36A
Transcript Accession Transcript Name Contained in Gene Tax ID Strand Position Biotype
ENSMUST00000113211 Rpl36a-001 ENSMUSG00000079435 10090 + X:134585654-134588056 protein_coding

Expression Patterns

Heat Map
Numeric Values
Transcript'; AdiposeAdrenalBladderBrainBreastColonHeartKidneyLiverLungMuscleOvaryPlacentaTestisENSMUST00000113211
Transcript ID Adipose Adrenal Bladder Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENSMUST00000113211 95.947±25.88 6.792±0.69 651.735±33.96 242.993±75.18 80.056±33.93 77.789±32.69 59.326±2.44 107.374±19.20 506.851±503.94 75.499±13.66 125.369±11.13 230.067±244.01 430.096±186.13 17.053±2.35

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_0000DV CIL_0000DV_0002 CGP X:134542336-134588062

Gene Ontology

GO IDEvidence TypeGO Description
GO:0003674 ND molecular_function
GO:0003735 IEA structural constituent of ribosome
GO:0005840 IEA ribosome
GO:0006412 IEA translation
GO:0008150 ND biological_process
GO:0022625 IEA cytosolic large ribosomal subunit
GO:0044822 IEA poly(A) RNA binding

Homologs

ENSEMBL Accession Gene Name Biotype Species E-Value Bit Score
ENST00000298289 RPL36AL-001 protein_coding Homo_sapiens 0 394
ENST00000372849 RPL36A-007 nonsense_mediated_decay Homo_sapiens 0 257
ENST00000392994 RPL36A-004 protein_coding Homo_sapiens 0 448
ENST00000399253 RP3-507I15.1-001 processed_pseudogene Homo_sapiens 0 302
ENST00000409170 RPL36A-HNRNPH2-002 protein_coding Homo_sapiens 0 444
ENST00000409338 RPL36A-HNRNPH2-001 protein_coding Homo_sapiens 0 261
ENST00000413334 AC011933.2-001 processed_pseudogene Homo_sapiens 0 416
ENST00000413542 RP4-612C19.1-001 processed_pseudogene Homo_sapiens 0 350
ENST00000418637 RP1-128O3.6-001 processed_pseudogene Homo_sapiens 0 220
ENST00000421785 RPL36AP10-001 processed_pseudogene Homo_sapiens 0 357
ENST00000427711 RP11-399E6.2-001 processed_pseudogene Homo_sapiens 0 235
ENST00000427805 RPL36A-002 protein_coding Homo_sapiens 0 518
ENST00000435130 RP11-84O12.3-001 processed_pseudogene Homo_sapiens 0 311
ENST00000435770 RPL36AP6-001 processed_pseudogene Homo_sapiens 0 300
ENST00000438468 AC004938.5-001 processed_pseudogene Homo_sapiens 0 302
ENST00000441658 RP11-77O7.1-001 processed_pseudogene Homo_sapiens 0 401
ENST00000445859 RPL36AP39-001 processed_pseudogene Homo_sapiens 0 388
ENST00000451203 AC104843.3-001 processed_pseudogene Homo_sapiens 0 403
ENST00000457490 RPL36AP13-001 processed_pseudogene Homo_sapiens 0 385
ENST00000459748 RP11-466H18.1-001 processed_pseudogene Homo_sapiens 0 466
ENST00000460165 RPL36AP43-001 processed_pseudogene Homo_sapiens 0 340
ENST00000461005 RP4-800G7.1-001 processed_pseudogene Homo_sapiens 0 241
ENST00000465340 RPL36A-003 retained_intron Homo_sapiens 0 263
ENST00000465744 RPL36A-010 retained_intron Homo_sapiens 0 492
ENST00000466725 CTC-550B14.1-001 processed_pseudogene Homo_sapiens 0 342
ENST00000471855 RPL36A-001 protein_coding Homo_sapiens 0 492
ENST00000471982 RP11-1085N6.1-001 processed_pseudogene Homo_sapiens 0 394
ENST00000476382 RPL36AP26-001 processed_pseudogene Homo_sapiens 0 409
ENST00000484625 RP11-477G18.2-001 processed_pseudogene Homo_sapiens 0 340
ENST00000485172 RP11-356M17.1-001 processed_pseudogene Homo_sapiens 0 263
ENST00000487216 RPL36AP51-001 processed_pseudogene Homo_sapiens 0 390
ENST00000489407 RPL36A-011 retained_intron Homo_sapiens 0 255
ENST00000490372 RPL36AP21-001 processed_pseudogene Homo_sapiens 0 351
ENST00000491307 RP11-83J16.1-001 processed_pseudogene Homo_sapiens 0 429
ENST00000491760 RP11-255I10.1-001 processed_pseudogene Homo_sapiens 0 355
ENST00000491851 RPL36A-008 retained_intron Homo_sapiens 1e-39 167
ENST00000492041 RP11-85G20.2-001 processed_pseudogene Homo_sapiens 0 292
ENST00000493084 RP11-216N21.1-001 processed_pseudogene Homo_sapiens 0 298
ENST00000494882 RP11-681N23.1-001 processed_pseudogene Homo_sapiens 0 433
ENST00000497944 RPL36AP45-001 processed_pseudogene Homo_sapiens 0 307
ENST00000523014 RP11-328L11.1-001 processed_pseudogene Homo_sapiens 3e-32 139
ENST00000553110 RPL36A-012 protein_coding Homo_sapiens 0 514
ENST00000614077 RPL36A-201 protein_coding Homo_sapiens 0 518

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