C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Transcript Info
Description: ribosomal protein L36A, pseudogene 1
Transcript Accession Transcript Name Contained in Gene Tax ID Strand Position Biotype
ENSMUST00000081987 Rpl36a-ps1-201 ENSMUSG00000060377 10090 - 14:98993980-98994300 processed_pseudogene

Mus musculus EnsemblGRCm38

Genome
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Genes
Structures from Ensembl
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Transcripts
Structures from Ensembl
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Expression Patterns

Heat Map
Numeric Values
Transcript'; AdiposeBladderBrainBreastColonLiverLungOvaryPlacentaTestisENSMUST00000081987
Transcript ID Adipose Bladder Brain Breast Colon Liver Lung Ovary Placenta Testis
ENSMUST00000081987 0.682±0.45 6.183±6.13 2.085±1.88 0.737±0.00 0.460±0.00 7.869±7.78 0.304±0.03 1.002±0.77 0.227±0.13 0.818±0.00

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_0004PD CIL_0004PD_0003 CGP 14:97786853-99046136
CIL_0009CE CIL_0009CE_0002 VISTA 14:98448098-99051239
CIL_00095A CIL_00095A_0002 VISTA 14:98465363-99066176
CIL_00095B CIL_00095B_0002 VISTA 14:98519484-99120234
CIL_000955 CIL_000955_0002 VISTA 14:98530064-99131289
CIL_0009CH CIL_0009CH_0002 VISTA 14:98532300-99134612
CIL_0009CG CIL_0009CG_0002 VISTA 14:98538461-99140576
CIL_000956 CIL_000956_0002 VISTA 14:98594511-99195418
CIL_0009CJ CIL_0009CJ_0002 VISTA 14:98658352-99259867

Gene Ontology

GO IDEvidence TypeGO Description
No GO terms available.

Homologs

ENSEMBL Accession Gene Name Biotype Species E-Value Bit Score
ENST00000298289 RPL36AL-001 protein_coding Homo_sapiens 0 372
ENST00000372849 RPL36A-007 nonsense_mediated_decay Homo_sapiens 0 222
ENST00000392994 RPL36A-004 protein_coding Homo_sapiens 0 401
ENST00000399253 RP3-507I15.1-001 processed_pseudogene Homo_sapiens 0 291
ENST00000409170 RPL36A-HNRNPH2-002 protein_coding Homo_sapiens 0 399
ENST00000413334 AC011933.2-001 processed_pseudogene Homo_sapiens 0 411
ENST00000418637 RP1-128O3.6-001 processed_pseudogene Homo_sapiens 0 204
ENST00000427711 RP11-399E6.2-001 processed_pseudogene Homo_sapiens 0 235
ENST00000427805 RPL36A-002 protein_coding Homo_sapiens 0 438
ENST00000435130 RP11-84O12.3-001 processed_pseudogene Homo_sapiens 0 283
ENST00000435770 RPL36AP6-001 processed_pseudogene Homo_sapiens 0 294
ENST00000438468 AC004938.5-001 processed_pseudogene Homo_sapiens 0 279
ENST00000441658 RP11-77O7.1-001 processed_pseudogene Homo_sapiens 0 374
ENST00000445859 RPL36AP39-001 processed_pseudogene Homo_sapiens 0 361
ENST00000451203 AC104843.3-001 processed_pseudogene Homo_sapiens 0 375
ENST00000457490 RPL36AP13-001 processed_pseudogene Homo_sapiens 0 357
ENST00000459748 RP11-466H18.1-001 processed_pseudogene Homo_sapiens 0 438
ENST00000460165 RPL36AP43-001 processed_pseudogene Homo_sapiens 0 335
ENST00000465744 RPL36A-010 retained_intron Homo_sapiens 0 435
ENST00000466725 CTC-550B14.1-001 processed_pseudogene Homo_sapiens 0 326
ENST00000471855 RPL36A-001 protein_coding Homo_sapiens 0 435
ENST00000471982 RP11-1085N6.1-001 processed_pseudogene Homo_sapiens 0 372
ENST00000487216 RPL36AP51-001 processed_pseudogene Homo_sapiens 0 374
ENST00000489407 RPL36A-011 retained_intron Homo_sapiens 0 226
ENST00000490372 RPL36AP21-001 processed_pseudogene Homo_sapiens 0 335
ENST00000492041 RP11-85G20.2-001 processed_pseudogene Homo_sapiens 0 281
ENST00000497944 RPL36AP45-001 processed_pseudogene Homo_sapiens 0 302
ENST00000523014 RP11-328L11.1-001 processed_pseudogene Homo_sapiens 3e-32 139
ENST00000553110 RPL36A-012 protein_coding Homo_sapiens 0 438
ENST00000614077 RPL36A-201 protein_coding Homo_sapiens 0 438

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