C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Transcript Info
Description: predicted gene 11970
Transcript Accession Transcript Name Contained in Gene Tax ID Strand Position Biotype
ENSMUST00000116105 Gm11970-001 ENSMUSG00000079988 10090 + 11:6446218-6446537 processed_pseudogene

Expression Patterns

Heat Map
Numeric Values
Transcript'; BrainLiverPlacentaTestisENSMUST00000116105
Transcript ID Brain Liver Placenta Testis
ENSMUST00000116105 0.027±0.00 0.051±0.01 0.514±0.00 1.110±1.20

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_0007BS CIL_0007BS_0003 CGP 11:6427229-6475917

Gene Ontology

GO IDEvidence TypeGO Description
No GO terms available.

Homologs

ENSEMBL Accession Gene Name Biotype Species E-Value Bit Score
ENST00000298289 RPL36AL-001 protein_coding Homo_sapiens 0 342
ENST00000372849 RPL36A-007 nonsense_mediated_decay Homo_sapiens 0 213
ENST00000392994 RPL36A-004 protein_coding Homo_sapiens 0 366
ENST00000399253 RP3-507I15.1-001 processed_pseudogene Homo_sapiens 0 291
ENST00000409170 RPL36A-HNRNPH2-002 protein_coding Homo_sapiens 0 364
ENST00000413334 AC011933.2-001 processed_pseudogene Homo_sapiens 0 363
ENST00000427711 RP11-399E6.2-001 processed_pseudogene Homo_sapiens 0 206
ENST00000427805 RPL36A-002 protein_coding Homo_sapiens 0 405
ENST00000435130 RP11-84O12.3-001 processed_pseudogene Homo_sapiens 0 281
ENST00000435770 RPL36AP6-001 processed_pseudogene Homo_sapiens 0 254
ENST00000438468 AC004938.5-001 processed_pseudogene Homo_sapiens 0 267
ENST00000441658 RP11-77O7.1-001 processed_pseudogene Homo_sapiens 0 339
ENST00000445859 RPL36AP39-001 processed_pseudogene Homo_sapiens 0 331
ENST00000451203 AC104843.3-001 processed_pseudogene Homo_sapiens 0 351
ENST00000457490 RPL36AP13-001 processed_pseudogene Homo_sapiens 0 333
ENST00000459748 RP11-466H18.1-001 processed_pseudogene Homo_sapiens 0 403
ENST00000460165 RPL36AP43-001 processed_pseudogene Homo_sapiens 0 316
ENST00000465744 RPL36A-010 retained_intron Homo_sapiens 0 401
ENST00000466725 CTC-550B14.1-001 processed_pseudogene Homo_sapiens 0 302
ENST00000471855 RPL36A-001 protein_coding Homo_sapiens 0 401
ENST00000471982 RP11-1085N6.1-001 processed_pseudogene Homo_sapiens 0 326
ENST00000487216 RPL36AP51-001 processed_pseudogene Homo_sapiens 0 344
ENST00000489407 RPL36A-011 retained_intron Homo_sapiens 0 217
ENST00000490372 RPL36AP21-001 processed_pseudogene Homo_sapiens 0 311
ENST00000492041 RP11-85G20.2-001 processed_pseudogene Homo_sapiens 0 257
ENST00000497944 RPL36AP45-001 processed_pseudogene Homo_sapiens 0 272
ENST00000523014 RP11-328L11.1-001 processed_pseudogene Homo_sapiens 2e-30 134
ENST00000553110 RPL36A-012 protein_coding Homo_sapiens 0 405
ENST00000614077 RPL36A-201 protein_coding Homo_sapiens 0 405

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