C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Transcript Info
Description: crumbs family member 2
Transcript Accession Transcript Name Contained in Gene Tax ID Strand Position Biotype
ENST00000460253 CRB2-002 ENSG00000148204 9606 + 9:123368779-123380324 nonsense_mediated_decay

Homo sapiens EnsemblGRCh38

Genome
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Genes
Structures from Ensembl
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Transcripts
Structures from Ensembl
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Expression Patterns

No expression data.

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_0006WP CIL_0006WP_0001 CGP 9:123356170-123930152

Gene Ontology

GO IDEvidence TypeGO Description
GO:0001707 ISS mesoderm formation
GO:0001756 ISS somitogenesis
GO:0005509 IEA calcium ion binding
GO:0005515 IEA protein binding
GO:0005886 IEA plasma membrane
GO:0010718 ISS positive regulation of epithelial to mesenchymal transition
GO:0010951 IMP negative regulation of endopeptidase activity
GO:0014028 ISS notochord formation
GO:0016021 IEA integral component of membrane
GO:0019828 IMP aspartic-type endopeptidase inhibitor activity
GO:0019899 IMP enzyme binding
GO:0030513 ISS positive regulation of BMP signaling pathway
GO:0043234 IDA protein complex
GO:0045121 IC membrane raft
GO:0045199 ISS maintenance of epithelial cell apical/basal polarity
GO:0070062 IDA extracellular vesicular exosome
GO:0072358 ISS cardiovascular system development

Homologs

ENSEMBL Accession Gene Name Biotype Species E-Value Bit Score
ENSMUST00000050372 Crb2-001 protein_coding Mus_musculus 0 2058
ENSMUST00000102787 Dennd1a-001 protein_coding Mus_musculus 3e-18 99

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