C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Region Summary
CIL_0006WP_0001 (Click to Hide/Show)
Source ID Type Tax ID Position
ENSG00000148204-ENSG00000119522 CGP 9606 9:123356170-123930152
GeneTranscriptPositionBiotype
ENSG00000207991 (MIR601)
microRNA 601 		ENST00000385256 (MIR601-201) 123402525-123402603 miRNA
ENSG00000229115 (RP11-417B4.3)
 ENST00000411924 (RP11-417B4.3-001) 123759220-123759775 processed_pseudogene
ENSG00000230826 (RP11-417B4.2)
 ENST00000423942 (RP11-417B4.2-001) 123736437-123751941 antisense
ENSG00000234881 (PIGFP2)
phosphatidylinositol glycan anchor biosynthesis, class F, pseudogene 2 		ENST00000421400 (PIGFP2-001) 123843036-123843686 processed_pseudogene
ENSG00000237336 (RP11-230L22.4)
 ENST00000458025 (RP11-230L22.4-001) 123491884-123493156 antisense

Homo sapiens Ensembl (GRCh38)

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CIL_0006WP_0002 (Click to Hide/Show)
Source ID Type Tax ID Position
ENSMUSG00000035403-ENSMUSG00000035392 CGP 10090 2:37776249-38287390
GeneTranscriptPositionBiotype
ENSMUSG00000035392 (Dennd1a)
DENN/MADD domain containing 1A 		ENSMUST00000102787 (Dennd1a-001) 37798991-38287375 protein_coding
ENSMUST00000126889 (Dennd1a-009) 38021266-38166081 retained_intron
ENSMUST00000128492 (Dennd1a-006) 38242917-38287214 retained_intron
ENSMUST00000130472 (Dennd1a-007) 37936664-38287188 protein_coding
ENSMUST00000136116 (Dennd1a-008) 38159252-38243470 retained_intron
ENSMUST00000136460 (Dennd1a-010) 37801072-37852440 protein_coding
ENSMUST00000140552 (Dennd1a-002) 37816916-38287390 nonsense_mediated_decay
ENSMUST00000142813 (Dennd1a-005) 38126604-38287218 nonsense_mediated_decay
ENSMUST00000143095 (Dennd1a-004) 38043346-38287358 nonsense_mediated_decay
ENSMUST00000150896 (Dennd1a-003) 37936619-38287377 nonsense_mediated_decay
ENSMUSG00000035403 (Crb2)
crumbs homolog 2 (Drosophila) 		ENSMUST00000050372 (Crb2-001) 37776249-37799103 protein_coding
ENSMUST00000137693 (Crb2-003) 37795169-37796616 processed_transcript
ENSMUST00000147600 (Crb2-002) 37791171-37793523 processed_transcript

Mus musculus Ensembl (GRCm38)

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Expression Patterns

Heat Map
Heat Map (Expressed Only)
Numeric Values
Region; Gene Transcript'; AdiposeAdrenalBladderBrainBreastColonHeartKidneyLiverLungMuscleOvaryPlacentaTestisCIL_0006WP_0001ENSG00000207991ENST00000385256ENSG00000229115ENST00000411924ENSG00000230826ENST00000423942ENSG00000234881ENST00000421400ENSG00000237336ENST00000458025CIL_0006WP_0002ENSMUSG00000035392ENSMUST00000102787ENSMUST00000126889ENSMUST00000128492ENSMUST00000130472ENSMUST00000136116ENSMUST00000136460ENSMUST00000140552ENSMUST00000142813ENSMUST00000143095ENSMUST00000150896ENSMUSG00000035403ENSMUST00000050372ENSMUST00000137693ENSMUST00000147600
Region; Gene Transcript'; AdiposeAdrenalBladderBrainBreastColonHeartKidneyLiverLungMuscleOvaryPlacentaTestisCIL_0006WP_0001ENSG00000207991ENST00000385256ENSG00000229115ENST00000411924ENSG00000230826ENST00000423942ENSG00000234881ENST00000421400ENSG00000237336ENST00000458025CIL_0006WP_0002ENSMUSG00000035392ENSMUST00000102787ENSMUST00000136460ENSMUST00000140552ENSMUSG00000035403ENSMUST00000050372
Gene Transcript Adipose Adrenal Bladder Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENSG00000207991 ENST00000385256 N/A N/A N/A 0.356±0.00 N/A N/A N/A N/A N/A N/A N/A 8.467±0.00 N/A N/A
ENSG00000229115 ENST00000411924 N/A N/A N/A N/A N/A 1.984±0.00 N/A N/A N/A N/A N/A 0.148±0.05 N/A N/A
ENSG00000230826 ENST00000423942 0.062±0.00 0.063±0.00 0.262±0.00 N/A 0.541±0.00 0.058±0.00 0.055±0.00 0.131±0.01 0.039±0.00 1.218±0.00 N/A 0.114±0.06 0.089±0.00 0.045±0.00
ENSG00000234881 ENST00000421400 N/A N/A 0.976±0.00 0.272±0.20 0.126±0.00 1.711±0.00 0.071±0.00 0.664±0.57 1.997±0.00 2.926±0.00 N/A 0.452±0.39 0.065±0.00 0.128±0.00
ENSG00000237336 ENST00000458025 N/A N/A N/A N/A 0.314±0.29 N/A N/A 0.435±0.00 N/A N/A N/A 0.277±0.21 N/A N/A
Gene Transcript Adipose Adrenal Bladder Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENSMUSG00000035392 ENSMUST00000102787 3.719±0.45 5.022±0.49 3.454±0.41 6.129±1.69 3.536±1.50 2.330±0.87 1.969±0.20 6.359±1.35 2.426±0.76 3.403±1.19 1.216±0.52 3.972±1.82 5.783±2.70 4.729±2.10
ENSMUST00000126889 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENSMUST00000128492 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENSMUST00000130472 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENSMUST00000136116 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENSMUST00000136460 N/A N/A N/A 11.806±0.00 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENSMUST00000140552 N/A N/A N/A 8.584±0.00 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENSMUST00000142813 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENSMUST00000143095 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENSMUST00000150896 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENSMUSG00000035403 ENSMUST00000050372 1.236±0.10 N/A 1.808±0.21 4.617±1.23 N/A 0.505±0.03 N/A 1.391±0.12 N/A 0.847±0.08 N/A 1.925±0.56 1.932±0.30 N/A
ENSMUST00000137693 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENSMUST00000147600 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A

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