C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Transcript Info
Description: DEAD (Asp-Glu-Ala-Asp) box polypeptide 39B
Transcript Accession Transcript Name Contained in Gene Tax ID Strand Position Biotype
ENST00000462256 DDX39B-004 ENSG00000198563 9606 - 6:31530219-31542017 retained_intron

Expression Patterns

Heat Map
Numeric Values
Transcript'; AdiposeAdrenalBladderBrainBreastColonHeartKidneyLiverLungMuscleOvaryPlacentaTestisENST00000462256
Transcript ID Adipose Adrenal Bladder Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENST00000462256 14.455±0.00 38.418±0.00 2.982±0.00 17.816±0.00 11.206±8.49 10.362±5.20 5.085±3.35 17.323±0.00 5.297±1.15 25.107±20.02 3.807±2.13 24.563±15.32 11.694±2.48 13.906±2.28

Conserved Regions

Gene is not located within a conserved region.

Gene Ontology

GO IDEvidence TypeGO Description
No GO terms available.

Homologs

ENSEMBL Accession Gene Name Biotype Species E-Value Bit Score
ENSMUST00000174164 Ddx39b-005 retained_intron Mus_musculus 0 1810
ENSMUST00000172549 Ddx39b-004 protein_coding Mus_musculus 0 1079
ENSMUST00000173731 Ddx39b-006 protein_coding Mus_musculus 0 1079
ENSMUST00000068056 Ddx39b-001 protein_coding Mus_musculus 0 1079
ENSMUST00000174757 Ddx39b-002 protein_coding Mus_musculus 0 1014
ENSDART00000052355 ddx39b-001 protein_coding Danio_rerio 0 394
ENSMUST00000162168 Zkscan5-004 nonsense_mediated_decay Mus_musculus 0.0000004 62

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