C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Transcript Info
Description: synaptophysin-like 1
Transcript Accession Transcript Name Contained in Gene Tax ID Strand Position Biotype
ENST00000464029 SYPL1-005 ENSG00000008282 9606 - 7:106091407-106097862 protein_coding

Expression Patterns

Heat Map
Numeric Values
Transcript'; BladderBrainBreastColonLiverMuscleOvaryENST00000464029
Transcript ID Bladder Brain Breast Colon Liver Muscle Ovary
ENST00000464029 3.307±0.00 1.288±0.00 3.715±0.00 2.862±0.00 6.145±0.00 3.235±0.00 8.443±0.00

Conserved Regions

Gene is not located within a conserved region.

Gene Ontology

GO IDEvidence TypeGO Description
GO:0016020 IEA membrane

Homologs

ENSEMBL Accession Gene Name Biotype Species E-Value Bit Score
ENSMUST00000020885 Sypl-002 protein_coding Mus_musculus 0 440
ENSMUST00000076698 Sypl-001 protein_coding Mus_musculus 0 440
ENSMUST00000122861 Sypl-005 nonsense_mediated_decay Mus_musculus 0 198
ENSMUST00000139339 Sypl-006 processed_transcript Mus_musculus 2e-40 171
ENSMUST00000131562 Sypl-003 retained_intron Mus_musculus 2e-40 171
ENSMUST00000129592 Sypl-004 processed_transcript Mus_musculus 4e-22 110

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