C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Transcript Info

Description: Uncharacterized protein {ECO:0000313|Ensembl:ENSP00000417050}; cDNA FLJ59144, highly similar to Tetraspanin-7 {ECO:0000313|EMBL:
Transcript Accession Transcript Name Contained in Gene Tax ID Strand Position Biotype
ENST00000465127 TM4SF2-001 ENSG00000250349 9606 + X:37349330-38687674 protein_coding

Expression Patterns

Heat Map
Numeric Values
Transcript'; KidneyPlacentaENST00000465127
Transcript ID Kidney Placenta
ENST00000465127 3.803±0.00 4.290±0.00

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_0005Z5 CIL_0005Z5_0001 CGP X:37008397-37457295

Gene Ontology

GO IDEvidence TypeGO Description
GO:0005509 IEA calcium ion binding
GO:0005576 IEA extracellular region
GO:0016021 IEA integral component of membrane

Homologs

ENSEMBL Accession Gene Name Biotype Species E-Value Bit Score
ENSMUST00000076354 Tspan7-001 protein_coding Mus_musculus 0 972
ENSMUST00000149982 Tspan7-003 retained_intron Mus_musculus 0 854
ENSMUST00000115526 Tspan7-002 protein_coding Mus_musculus 0 854
ENSMUST00000114024 Prrg1-201 protein_coding Mus_musculus 0 281
ENSMUST00000156427 Prrg1-004 retained_intron Mus_musculus 0 279
ENSMUST00000177904 Prrg1-202 protein_coding Mus_musculus 0 259
ENSMUST00000114025 Prrg1-001 protein_coding Mus_musculus 0 259
ENSMUST00000126994 Prrg1-003 retained_intron Mus_musculus 0 257
ENSMUST00000126209 Prrg1-005 processed_transcript Mus_musculus 0 226
ENSMUST00000134602 Prrg1-007 protein_coding Mus_musculus 1.96182e-44 183
ENSDART00000016002 tspan7-001 protein_coding Danio_rerio 6e-25 119

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