C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Transcript Info
Description: tetraspanin 7
Transcript Accession Transcript Name Contained in Gene Tax ID Strand Position Biotype
ENSMUST00000076354 Tspan7-001 ENSMUSG00000058254 10090 + X:10485158-10596605 protein_coding

Expression Patterns

Heat Map
Numeric Values
Transcript'; AdiposeAdrenalBladderBrainBreastColonHeartKidneyLiverLungMuscleOvaryPlacentaTestisENSMUST00000076354
Transcript ID Adipose Adrenal Bladder Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENSMUST00000076354 63.777±25.17 31.545±6.59 47.212±3.67 189.319±166.24 48.783±5.67 54.356±2.16 58.612±9.88 41.923±1.71 19.461±6.61 400.724±65.56 40.845±1.91 21.501±4.43 11.579±6.69 1.528±0.62

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_0005QH CIL_0005QH_0002 CGP X:10252305-10596605
CIL_0005QI CIL_0005QI_0002 CGP X:10485158-10719690

Gene Ontology

GO IDEvidence TypeGO Description
GO:0016021 IEA integral component of membrane

Homologs

ENSEMBL Accession Gene Name Biotype Species E-Value Bit Score
ENSDART00000016002 tspan7-001 protein_coding Danio_rerio 1e-38 165
ENST00000286824 TSPAN7-005 protein_coding Homo_sapiens 0 1338
ENST00000378482 TSPAN7-001 protein_coding Homo_sapiens 0 1535
ENST00000419600 TSPAN7-006 retained_intron Homo_sapiens 0 1387
ENST00000465127 TM4SF2-001 protein_coding Homo_sapiens 0 972
ENST00000471410 TSPAN7-003 nonsense_mediated_decay Homo_sapiens 0 1181
ENST00000475216 TSPAN7-004 nonsense_mediated_decay Homo_sapiens 0 1258
ENST00000480976 TSPAN7-008 nonsense_mediated_decay Homo_sapiens 0 431
ENST00000488893 TSPAN7-002 processed_transcript Homo_sapiens 0 680
ENST00000494037 TSPAN7-009 processed_transcript Homo_sapiens 0 316

Loading