C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Transcript Info
Description: POU class 5 homeobox 1B
Transcript Accession Transcript Name Contained in Gene Tax ID Strand Position Biotype
ENST00000465342 POU5F1B-001 ENSG00000212993 9606 + 8:127414290-127420069 protein_coding

Expression Patterns

Heat Map
Numeric Values
Transcript'; AdiposeAdrenalBladderBrainBreastColonHeartKidneyLiverLungMuscleOvaryPlacentaTestisENST00000465342
Transcript ID Adipose Adrenal Bladder Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENST00000465342 0.009±0.00 0.085±0.00 0.050±0.00 0.035±0.00 0.067±0.00 0.022±0.02 0.040±0.00 0.148±0.00 0.017±0.00 0.161±0.11 0.008±0.00 0.049±0.02 0.022±0.01 0.054±0.00

Conserved Regions

Gene is not located within a conserved region.

Gene Ontology

GO IDEvidence TypeGO Description
GO:0003677 IEA DNA binding
GO:0003700 TAS:IEA sequence-specific DNA binding transcription factor activity
GO:0005634 IEA nucleus
GO:0006351 IEA transcription, DNA-templated
GO:0006355 NAS:IEA regulation of transcription, DNA-templated
GO:0043565 IEA sequence-specific DNA binding

Homologs

ENSEMBL Accession Gene Name Biotype Species E-Value Bit Score
ENSMUST00000025271 Pou5f1-001 protein_coding Mus_musculus 0 905
ENSMUST00000179332 5730455P16Rik-201 protein_coding Mus_musculus 0.00000005 66
ENSMUST00000103225 5730455P16Rik-001 protein_coding Mus_musculus 0.00000005 66
ENSMUST00000155422 Slc38a11-002 processed_transcript Mus_musculus 0.0002 53
ENSMUST00000145583 Slc38a11-003 processed_transcript Mus_musculus 0.0002 53

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