C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Transcript Info
Description: RIKEN cDNA 5730455P16 gene
Transcript Accession Transcript Name Contained in Gene Tax ID Strand Position Biotype
ENSMUST00000179332 5730455P16Rik-201 ENSMUSG00000057181 10090 - 11:80360492-80378015 protein_coding

Mus musculus EnsemblGRCm38

Genome
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Genes
Structures from Ensembl
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Transcripts
Structures from Ensembl
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Expression Patterns

Heat Map
Numeric Values
Transcript'; AdiposeAdrenalBreastColonKidneyLiverLungOvaryENSMUST00000179332
Transcript ID Adipose Adrenal Breast Colon Kidney Liver Lung Ovary
ENSMUST00000179332 2.591±0.00 2.491±0.30 2.076±0.62 1.338±0.43 1.548±0.00 1.372±0.71 1.813±0.14 2.103±0.66

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_0000VP CIL_0000VP_0002 CGP 11:80300912-80378034
CIL_0005IX CIL_0005IX_0002 CGP 11:80360492-80405733

Gene Ontology

GO IDEvidence TypeGO Description
GO:0003674 ND molecular_function
GO:0005575 ND cellular_component
GO:0008150 ND biological_process

Homologs

ENSEMBL Accession Gene Name Biotype Species E-Value Bit Score
ENST00000225805 C17orf75-201 protein_coding Homo_sapiens 0 1496
ENST00000261854 SPPL2A-001 protein_coding Homo_sapiens 0.0000000004 73
ENST00000265563 PRKAR2A-001 protein_coding Homo_sapiens 0.000000001 71
ENST00000267436 L2HGDH-001 protein_coding Homo_sapiens 0.000003 60
ENST00000268049 USP3-201 protein_coding Homo_sapiens 0.0000002 64
ENST00000274008 SPATA5-001 protein_coding Homo_sapiens 0.00001 58
ENST00000280481 FREM2-001 protein_coding Homo_sapiens 0.00002 58
ENST00000296446 PRKAR2A-003 protein_coding Homo_sapiens 0.0000000006 71
ENST00000296519 CEP44-201 protein_coding Homo_sapiens 0.0000001 64
ENST00000299727 GALR1-001 protein_coding Homo_sapiens 0.00001 58
ENST00000312828 RNF152-001 protein_coding Homo_sapiens 0.000000002 71
ENST00000322753 MINOS1-001 protein_coding Homo_sapiens 0.000005 58
ENST00000328654 ZNF26-001 protein_coding Homo_sapiens 0.000002 62
ENST00000336273 MTDH-001 protein_coding Homo_sapiens 0.000002 60
ENST00000344248 OR7D2-001 protein_coding Homo_sapiens 0.0000003 62
ENST00000353267 CREB1-002 protein_coding Homo_sapiens 0.000003 60
ENST00000366112 RNF10-010 retained_intron Homo_sapiens 0.0000000002 71
ENST00000366628 NTPCR-001 protein_coding Homo_sapiens 0.00000001 68
ENST00000372827 BMP8B-001 protein_coding Homo_sapiens 0.00000004 66
ENST00000380739 SERPINB1-003 protein_coding Homo_sapiens 0.000001 60
ENST00000393469 SLC12A8-001 protein_coding Homo_sapiens 0.0000000006 71
ENST00000396791 CEP44-003 nonsense_mediated_decay Homo_sapiens 0.0000001 64
ENST00000421284 L2HGDH-003 protein_coding Homo_sapiens 0.0000008 60
ENST00000430155 SLC12A8-003 protein_coding Homo_sapiens 0.0000000005 71
ENST00000432329 CREB1-001 protein_coding Homo_sapiens 0.000003 60
ENST00000441564 PSD4-003 protein_coding Homo_sapiens 0.000000007 69
ENST00000465342 POU5F1B-001 protein_coding Homo_sapiens 0.00000005 66
ENST00000465475 SLC12A8-006 processed_transcript Homo_sapiens 0.0000000003 71
ENST00000468735 NKTR-002 retained_intron Homo_sapiens 0.000000001 71
ENST00000469902 SLC12A8-004 protein_coding Homo_sapiens 0.0000000005 71
ENST00000473262 SLC12A8-005 nonsense_mediated_decay Homo_sapiens 0.0000000005 71
ENST00000483404 TARBP1-002 processed_transcript Homo_sapiens 0.0000000006 71
ENST00000494643 MAPK3-015 processed_transcript Homo_sapiens 0.0000000000005 79
ENST00000498730 NKTR-008 retained_intron Homo_sapiens 0.0000000009 71
ENST00000503780 CEP44-001 protein_coding Homo_sapiens 0.0000001 64
ENST00000509014 CALCOCO2-019 retained_intron Homo_sapiens 0.000000005 66
ENST00000530824 BACE1-016 retained_intron Homo_sapiens 0.000000008 66
ENST00000540797 USP3-202 protein_coding Homo_sapiens 0.0000002 64
ENST00000559192 USP3-002 nonsense_mediated_decay Homo_sapiens 0.0000002 64
ENST00000567697 PMM2-007 retained_intron Homo_sapiens 0.00000000008 75
ENST00000573903 CCDC40-014 processed_transcript Homo_sapiens 0.0000002 60
ENST00000577809 C17orf75-001 protein_coding Homo_sapiens 0 1485
ENST00000578403 LPO-004 retained_intron Homo_sapiens 0.000002 58
ENST00000578643 LPO-003 retained_intron Homo_sapiens 0.000005 58
ENST00000580346 LPO-005 retained_intron Homo_sapiens 0.000002 58
ENST00000580485 C17orf75-005 retained_intron Homo_sapiens 0 617
ENST00000580558 C17orf75-007 protein_coding Homo_sapiens 0 944
ENST00000581747 C17orf75-009 protein_coding Homo_sapiens 0 797
ENST00000582073 C17orf75-003 retained_intron Homo_sapiens 0 584
ENST00000582833 NUP85-007 processed_transcript Homo_sapiens 0.0000006 58
ENST00000582961 C17orf75-012 protein_coding Homo_sapiens 0 300
ENST00000583221 C17orf75-004 nonsense_mediated_decay Homo_sapiens 0 789
ENST00000583334 C17orf75-008 protein_coding Homo_sapiens 0 508
ENST00000583774 C17orf75-002 protein_coding Homo_sapiens 0 1003
ENST00000587391 WDR62-003 nonsense_mediated_decay Homo_sapiens 0.000000004 69
ENST00000590993 ZFP82-003 retained_intron Homo_sapiens 0.000000001 71
ENST00000591566 MEF2BNB-012 retained_intron Homo_sapiens 0.000005 58
ENST00000592148 MXRA7-002 protein_coding Homo_sapiens 0.000000008 68
ENST00000617872 MINOS1-201 protein_coding Homo_sapiens 0.000005 58

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