C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Transcript Info

Description: ring finger protein, transmembrane 1
Transcript Accession Transcript Name Contained in Gene Tax ID Strand Position Biotype
ENSMUST00000125675 Rnft1-003 ENSMUSG00000020521 10090 + 11:86484685-86490511 processed_transcript

Expression Patterns

Heat Map
Numeric Values
Transcript'; ColonKidneyLiverPlacentaTestisENSMUST00000125675
Transcript ID Colon Kidney Liver Placenta Testis
ENSMUST00000125675 3.949±0.00 4.242±0.00 4.037±0.00 17.426±0.00 9.014±0.81

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_00039N CIL_00039N_0002 CGP 11:86267033-86499025
CIL_0008VS CIL_0008VS_0002 VISTA 11:86270110-86871719
CIL_0008Y2 CIL_0008Y2_0002 VISTA 11:86286196-86887829
CIL_00081F CIL_00081F_0002 VISTA 11:86323484-86925483

Gene Ontology

GO IDEvidence TypeGO Description
No GO terms available.

Homologs

ENSEMBL Accession Gene Name Biotype Species E-Value Bit Score
ENST00000305783 RNFT1-001 protein_coding Homo_sapiens 0 355
ENST00000340898 RNFT1P3-001 unprocessed_pseudogene Homo_sapiens 1.96182e-44 183
ENST00000442346 RNFT1-201 protein_coding Homo_sapiens 0 337
ENST00000466544 RNFT1-003 nonsense_mediated_decay Homo_sapiens 0 350
ENST00000477207 RNFT1-004 retained_intron Homo_sapiens 0 355
ENST00000482446 RNFT1-002 nonsense_mediated_decay Homo_sapiens 0 355
ENST00000484257 RNFT1-005 nonsense_mediated_decay Homo_sapiens 0 231
ENST00000486103 RNFT1-009 retained_intron Homo_sapiens 0 228
ENST00000493737 RNFT1-006 retained_intron Homo_sapiens 1e-39 167
ENST00000586083 RNFT1-008 retained_intron Homo_sapiens 0 355
ENST00000589113 RNFT1-007 protein_coding Homo_sapiens 0 206

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