C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Transcript Info
Description: ring finger protein, transmembrane 1
Transcript Accession Transcript Name Contained in Gene Tax ID Strand Position Biotype
ENSMUST00000020827 Rnft1-001 ENSMUSG00000020521 10090 + 11:86484657-86499025 protein_coding

Expression Patterns

Heat Map
Numeric Values
Transcript'; AdiposeAdrenalBladderBrainBreastColonHeartKidneyLiverLungMuscleOvaryPlacentaTestisENSMUST00000020827
Transcript ID Adipose Adrenal Bladder Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENSMUST00000020827 3.338±0.63 1.587±0.44 8.338±0.12 2.860±0.88 2.611±0.33 2.036±0.63 2.559±0.19 3.086±0.63 4.042±0.45 3.079±0.24 3.750±1.50 2.602±1.14 3.781±1.51 2.448±0.31

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_00039N CIL_00039N_0002 CGP 11:86267033-86499025
CIL_0008VS CIL_0008VS_0002 VISTA 11:86270110-86871719
CIL_0008Y2 CIL_0008Y2_0002 VISTA 11:86286196-86887829
CIL_00081F CIL_00081F_0002 VISTA 11:86323484-86925483

Gene Ontology

GO IDEvidence TypeGO Description
GO:0003674 ND molecular_function
GO:0005575 ND cellular_component
GO:0008150 ND biological_process
GO:0008270 IEA zinc ion binding
GO:0016021 IEA integral component of membrane

Homologs

ENSEMBL Accession Gene Name Biotype Species E-Value Bit Score
ENST00000305783 RNFT1-001 protein_coding Homo_sapiens 0 1679
ENST00000340898 RNFT1P3-001 unprocessed_pseudogene Homo_sapiens 0 706
ENST00000442346 RNFT1-201 protein_coding Homo_sapiens 0 475
ENST00000466544 RNFT1-003 nonsense_mediated_decay Homo_sapiens 0 1053
ENST00000477207 RNFT1-004 retained_intron Homo_sapiens 0 494
ENST00000482446 RNFT1-002 nonsense_mediated_decay Homo_sapiens 0 1086
ENST00000484257 RNFT1-005 nonsense_mediated_decay Homo_sapiens 0 534
ENST00000486103 RNFT1-009 retained_intron Homo_sapiens 0 676
ENST00000493737 RNFT1-006 retained_intron Homo_sapiens 0 401
ENST00000586083 RNFT1-008 retained_intron Homo_sapiens 0 592
ENST00000589113 RNFT1-007 protein_coding Homo_sapiens 0 350

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