C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Transcript Info
Description: stromal interaction molecule 2
Transcript Accession Transcript Name Contained in Gene Tax ID Strand Position Biotype
ENST00000467087 STIM2-001 ENSG00000109689 9606 + 4:26860691-27025381 protein_coding

Expression Patterns

Heat Map
Numeric Values
Transcript'; AdiposeBladderBrainBreastLiverOvaryTestisENST00000467087
Transcript ID Adipose Bladder Brain Breast Liver Ovary Testis
ENST00000467087 0.875±0.00 0.300±0.00 1.016±0.00 0.910±0.00 0.395±0.14 2.609±1.36 0.704±0.00

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_0002TT CIL_0002TT_0002 CGP 4:26576437-27025381
CIL_00079S CIL_00079S_0001 CGP 4:26857678-31146805

Gene Ontology

GO IDEvidence TypeGO Description
GO:0005246 IMP calcium channel regulator activity
GO:0005509 IDA calcium ion binding
GO:0005515 IPI:IEA protein binding
GO:0005783 IDA endoplasmic reticulum
GO:0005886 IDA plasma membrane
GO:0006874 IMP cellular calcium ion homeostasis
GO:0015279 IDA store-operated calcium channel activity
GO:0016021 IEA integral component of membrane
GO:0032237 IDA activation of store-operated calcium channel activity
GO:0051928 IDA positive regulation of calcium ion transport
GO:0070588 IDA calcium ion transmembrane transport

Homologs

ENSEMBL Accession Gene Name Biotype Species E-Value Bit Score
ENSMUST00000117661 Stim2-001 protein_coding Mus_musculus 0 3716
ENSMUST00000071083 Stim2-004 protein_coding Mus_musculus 0 3221
ENSMUST00000152812 Stim2-002 protein_coding Mus_musculus 0 2154
ENSMUST00000129109 Stim2-005 retained_intron Mus_musculus 0 538
ENSMUST00000155608 Stim2-003 processed_transcript Mus_musculus 0 520

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