C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Transcript Info

Description: synaptophysin
Transcript Accession Transcript Name Contained in Gene Tax ID Strand Position Biotype
ENST00000469389 SYP-009 ENSG00000102003 9606 - X:49194191-49200193 nonsense_mediated_decay

Expression Patterns

Heat Map
Numeric Values
Transcript'; ColonENST00000469389
Transcript ID Colon
ENST00000469389 0.636±0.00

Conserved Regions

Gene is not located within a conserved region.

Gene Ontology

GO IDEvidence TypeGO Description
GO:0005215 IEA transporter activity
GO:0006810 IEA transport
GO:0008021 IEA synaptic vesicle
GO:0016020 IEA membrane
GO:0048168 IEA regulation of neuronal synaptic plasticity

Homologs

ENSEMBL Accession Gene Name Biotype Species E-Value Bit Score
ENSMUST00000149795 Syp-002 retained_intron Mus_musculus 0 324
ENSMUST00000069520 Syp-001 protein_coding Mus_musculus 0 324
ENSMUST00000137515 Syp-005 retained_intron Mus_musculus 0 257
ENSMUST00000150572 Syp-004 processed_transcript Mus_musculus 0 252
ENSMUST00000128890 Syp-003 protein_coding Mus_musculus 0 252
ENSMUST00000134355 Syp-006 retained_intron Mus_musculus 0 237

Loading