C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Transcript Info
Description: ArfGAP with GTPase domain, ankyrin repeat and PH domain 3
Transcript Accession Transcript Name Contained in Gene Tax ID Strand Position Biotype
ENST00000473312 AGAP3-004 ENSG00000133612 9606 + 7:151086742-151123635 protein_coding

Expression Patterns

Heat Map
Numeric Values
Transcript'; AdiposeAdrenalBrainBreastColonHeartKidneyLiverMuscleOvaryPlacentaTestisENST00000473312
Transcript ID Adipose Adrenal Brain Breast Colon Heart Kidney Liver Muscle Ovary Placenta Testis
ENST00000473312 13.656±0.00 10.482±0.00 68.786±61.17 9.515±0.00 7.426±0.00 3.928±3.44 3.174±0.00 6.650±0.00 9.796±0.00 11.008±0.00 6.969±1.84 11.089±0.00

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_0008T1 CIL_0008T1_0001 VISTA 7:150668461-151272977
CIL_0003TG CIL_0003TG_0001 CGP 7:151081080-151144436
CIL_0004EO CIL_0004EO_0001 CGP 7:151085831-151174745

Gene Ontology

GO IDEvidence TypeGO Description
GO:0005525 IEA GTP binding
GO:0005622 IEA intracellular
GO:0006184 IEA GTP catabolic process
GO:0007165 IEA signal transduction
GO:0007264 IEA small GTPase mediated signal transduction
GO:0008060 IEA ARF GTPase activator activity
GO:0008270 IEA zinc ion binding
GO:0015031 IEA protein transport
GO:0016020 IEA membrane
GO:0032312 IEA regulation of ARF GTPase activity
GO:0043547 IEA positive regulation of GTPase activity

Homologs

ENSEMBL Accession Gene Name Biotype Species E-Value Bit Score
ENSMUST00000024123 Agap3-201 protein_coding Mus_musculus 0 1509
ENSDART00000128690 protein_coding Danio_rerio 0 682
ENSMUST00000190096 Agap1-002 protein_coding Mus_musculus 0 569
ENSMUST00000027521 Agap1-001 protein_coding Mus_musculus 0 569
ENSMUST00000185417 Agap1-004 retained_intron Mus_musculus 3e-36 158

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