C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Transcript Info
Description: ArfGAP with GTPase domain, ankyrin repeat and PH domain 1
Transcript Accession Transcript Name Contained in Gene Tax ID Strand Position Biotype
ENSMUST00000190096 Agap1-002 ENSMUSG00000055013 10090 + 1:89454874-89890001 protein_coding

Expression Patterns

Heat Map
Numeric Values
Transcript'; AdiposeAdrenalBrainBreastColonHeartKidneyLiverLungMuscleOvaryPlacentaTestisENSMUST00000190096
Transcript ID Adipose Adrenal Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENSMUST00000190096 4.222±1.69 4.874±2.35 2.437±0.00 3.355±0.38 7.856±2.27 2.258±0.28 8.331±1.42 0.947±0.19 6.206±0.81 0.639±0.12 5.882±1.59 3.318±0.99 3.590±2.19

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_0003R3 CIL_0003R3_0002 CGP 1:89070415-89897617
CIL_0007U0 CIL_0007U0_0002 VISTA 1:89413750-90014911
CIL_0003RE CIL_0003RE_0002 CGP 1:89454806-89931179

Gene Ontology

GO IDEvidence TypeGO Description
GO:0003924 ISA GTPase activity
GO:0005525 IEA GTP binding
GO:0005829 ISA cytosol
GO:0006184 ISA GTP catabolic process
GO:0007264 IEA small GTPase mediated signal transduction
GO:0008060 IEA ARF GTPase activator activity
GO:0008270 IEA zinc ion binding
GO:0032312 IEA regulation of ARF GTPase activity
GO:0043547 IEA positive regulation of GTPase activity

Homologs

ENSEMBL Accession Gene Name Biotype Species E-Value Bit Score
ENSDART00000089445 agap1-001 protein_coding Danio_rerio 0 981
ENST00000304032 AGAP1-001 protein_coding Homo_sapiens 0 1893
ENST00000336665 AGAP1-002 protein_coding Homo_sapiens 0 3733
ENST00000397238 AGAP3-001 protein_coding Homo_sapiens 0 776
ENST00000402604 AGAP1-006 protein_coding Homo_sapiens 0 449
ENST00000409457 AGAP1-003 protein_coding Homo_sapiens 0 1526
ENST00000409538 AGAP1-004 protein_coding Homo_sapiens 0 3297
ENST00000418654 AGAP1-007 protein_coding Homo_sapiens 0 652
ENST00000427215 RP11-545A16.3-001 processed_pseudogene Homo_sapiens 0 872
ENST00000428334 AGAP1-201 protein_coding Homo_sapiens 0 1893
ENST00000447378 RP11-549A6.1-001 processed_pseudogene Homo_sapiens 0 865
ENST00000448025 AGAP1-010 protein_coding Homo_sapiens 0 259
ENST00000453371 AGAP1-005 processed_transcript Homo_sapiens 0 1369
ENST00000466575 AGAP1-008 retained_intron Homo_sapiens 0 459
ENST00000473312 AGAP3-004 protein_coding Homo_sapiens 0 569
ENST00000479901 AGAP3-003 protein_coding Homo_sapiens 0 549
ENST00000482882 AGAP1-009 retained_intron Homo_sapiens 0 350
ENST00000614409 AGAP1-202 protein_coding Homo_sapiens 0 3297
ENST00000619456 AGAP1-203 protein_coding Homo_sapiens 0 1090
ENST00000622464 AGAP3-201 protein_coding Homo_sapiens 0 776

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