C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Transcript Info
Description: high mobility group nucleosomal binding domain 2 pseudogene 13
Transcript Accession Transcript Name Contained in Gene Tax ID Strand Position Biotype
ENST00000476476 HMGN2P13-001 ENSG00000241810 9606 + 3:153067278-153067551 processed_pseudogene

Expression Patterns

Heat Map
Numeric Values
Transcript'; AdiposeKidneyOvaryTestisENST00000476476
Transcript ID Adipose Kidney Ovary Testis
ENST00000476476 0.060±0.00 0.067±0.00 0.085±0.00 0.116±0.00

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_0004SK CIL_0004SK_0002 CGP 3:152834693-153167173

Gene Ontology

GO IDEvidence TypeGO Description
No GO terms available.

Homologs

ENSEMBL Accession Gene Name Biotype Species E-Value Bit Score
ENSMUST00000178676 Gm10182-201 processed_pseudogene Mus_musculus 0 311
ENSMUST00000102552 Hmgn2-003 protein_coding Mus_musculus 0 311
ENSMUST00000102553 Hmgn2-001 protein_coding Mus_musculus 0 311
ENSMUST00000075602 Gm10282-201 protein_coding Mus_musculus 0 311
ENSMUST00000121537 Gm7931-001 processed_pseudogene Mus_musculus 0 305
ENSMUST00000125266 Hmgn2-011 processed_transcript Mus_musculus 0 302
ENSMUST00000123234 Hmgn2-012 protein_coding Mus_musculus 0 300
ENSMUST00000137456 Hmgn2-010 processed_transcript Mus_musculus 0 300
ENSMUST00000138458 Hmgn2-004 processed_transcript Mus_musculus 0 300
ENSMUST00000105893 Hmgn2-009 protein_coding Mus_musculus 0 300
ENSMUST00000189273 RP23-429J21.2-001 processed_pseudogene Mus_musculus 0 296
ENSMUST00000093430 Gm7125-201 processed_pseudogene Mus_musculus 0 294
ENSMUST00000159886 Gm10357-001 processed_pseudogene Mus_musculus 0 287
ENSMUST00000120716 Hmgn2-ps1-001 processed_pseudogene Mus_musculus 0 283
ENSMUST00000100472 Hmgn2-007 protein_coding Mus_musculus 0 283
ENSMUST00000120483 Gm14008-001 processed_pseudogene Mus_musculus 0 274
ENSMUST00000189471 RP24-176P22.2-001 processed_pseudogene Mus_musculus 0 268
ENSMUST00000115986 Hmgn2l6-001 processed_pseudogene Mus_musculus 0 267
ENSMUST00000153622 Hmgn2-013 retained_intron Mus_musculus 0 257
ENSMUST00000136327 Hmgn2-006 protein_coding Mus_musculus 0 257
ENSMUST00000184601 Gm10105-001 processed_pseudogene Mus_musculus 0 239
ENSMUST00000188317 RP24-447G12.2-001 protein_coding Mus_musculus 0 237
ENSMUST00000165525 Gm16494-201 protein_coding Mus_musculus 0 226
ENSMUST00000097278 Gm6594-201 protein_coding Mus_musculus 0 226
ENSMUST00000130809 Hmgn2-005 retained_intron Mus_musculus 0 220
ENSMUST00000145025 Hmgn2-002 retained_intron Mus_musculus 0 220
ENSMUST00000120954 Gm12196-001 processed_pseudogene Mus_musculus 0 215
ENSMUST00000177675 Gm20379-201 processed_pseudogene Mus_musculus 0 207
ENSMUST00000071770 Gm5899-201 processed_pseudogene Mus_musculus 0 198
ENSMUST00000136859 Hmgn2-008 retained_intron Mus_musculus 6e-40 167
ENSMUST00000153501 Gm16510-001 processed_pseudogene Mus_musculus 2e-34 148

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