C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Transcript Info
Description: keratin 4
Transcript Accession Transcript Name Contained in Gene Tax ID Strand Position Biotype
ENSMUST00000023797 Krt4-201 ENSMUSG00000059668 10090 - 15:101918536-101924735 protein_coding

Expression Patterns

Heat Map
Numeric Values
Transcript'; AdiposeAdrenalBladderBrainBreastColonHeartKidneyLiverLungMuscleOvaryPlacentaTestisENSMUST00000023797
Transcript ID Adipose Adrenal Bladder Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENSMUST00000023797 0.082±0.06 0.151±0.09 31.153±4.35 0.614±0.43 0.324±0.17 0.024±0.00 0.138±0.09 0.076±0.04 0.062±0.05 290.555±304.58 0.030±0.02 0.092±0.05 0.096±0.07 0.111±0.04

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_00033Q CIL_00033Q_0018 CGP 15:101884351-101924735
CIL_00033Q CIL_00033Q_000Z CGP 15:101918536-101940324

Gene Ontology

GO IDEvidence TypeGO Description
GO:0005198 IEA structural molecule activity
GO:0005515 IEA protein binding
GO:0005634 IEA nucleus
GO:0007010 IEA cytoskeleton organization
GO:0009790 TAS embryo development
GO:0009986 IEA cell surface
GO:0030855 IMP epithelial cell differentiation
GO:0045095 TAS keratin filament
GO:0045111 IEA intermediate filament cytoskeleton
GO:0046982 TAS protein heterodimerization activity
GO:0050680 IMP negative regulation of epithelial cell proliferation

Homologs

ENSEMBL Accession Gene Name Biotype Species E-Value Bit Score
ENST00000224237 VIM-001 protein_coding Homo_sapiens 0.00000000000004 84
ENST00000252250 KRT6C-001 protein_coding Homo_sapiens 0 638
ENST00000252252 KRT6B-001 protein_coding Homo_sapiens 0 665
ENST00000293308 KRT8-002 protein_coding Homo_sapiens 0 364
ENST00000304620 KRT78-001 protein_coding Homo_sapiens 0 346
ENST00000305620 KRT74-001 protein_coding Homo_sapiens 0 353
ENST00000305748 KRT73-001 protein_coding Homo_sapiens 0 484
ENST00000309680 KRT2-001 protein_coding Homo_sapiens 0 396
ENST00000332411 KRT76-001 protein_coding Homo_sapiens 0 627
ENST00000359499 KRT78-002 protein_coding Homo_sapiens 0 337
ENST00000373960 DES-001 protein_coding Homo_sapiens 1e-20 106
ENST00000409686 KRT8P11-001 processed_pseudogene Homo_sapiens 0 244
ENST00000414254 KRT8P14-001 processed_pseudogene Homo_sapiens 7e-31 139
ENST00000423953 KRT8P20-001 processed_pseudogene Homo_sapiens 0.00003 55
ENST00000425226 KRT8P15-001 processed_pseudogene Homo_sapiens 0 200
ENST00000432100 KRT8P30-001 processed_pseudogene Homo_sapiens 0.00000000000001 84
ENST00000441370 KRT8P38-001 processed_pseudogene Homo_sapiens 0.000000000002 79
ENST00000441609 KRT8P44-001 processed_pseudogene Homo_sapiens 1e-27 128
ENST00000451609 KRT8P37-001 processed_pseudogene Homo_sapiens 0 195
ENST00000463294 KRT8P13-001 processed_pseudogene Homo_sapiens 0 274
ENST00000469543 VIM-003 nonsense_mediated_decay Homo_sapiens 0.000000000003 79
ENST00000477226 DES-006 retained_intron Homo_sapiens 4e-21 106
ENST00000487938 VIM-002 nonsense_mediated_decay Homo_sapiens 0.00000000000005 84
ENST00000492726 DES-007 retained_intron Homo_sapiens 3e-21 106
ENST00000512037 KRT8P46-001 processed_pseudogene Homo_sapiens 0 224
ENST00000533003 KRT8P7-001 processed_pseudogene Homo_sapiens 0 248
ENST00000533985 KRT8P41-001 processed_pseudogene Homo_sapiens 3e-40 171
ENST00000544301 VIM-201 protein_coding Homo_sapiens 0.00000000000005 84
ENST00000546384 KRT74-002 retained_intron Homo_sapiens 4e-39 165
ENST00000546583 KRT8-005 retained_intron Homo_sapiens 0 250
ENST00000546897 KRT8-003 protein_coding Homo_sapiens 0 364
ENST00000546934 KRT73-002 retained_intron Homo_sapiens 0 344
ENST00000547031 KRT8-020 retained_intron Homo_sapiens 0 285
ENST00000548097 KRT4-002 nonsense_mediated_decay Homo_sapiens 0 963
ENST00000549343 KRT74-003 protein_coding Homo_sapiens 2e-38 165
ENST00000550170 KRT8-008 retained_intron Homo_sapiens 0 250
ENST00000551956 KRT4-001 protein_coding Homo_sapiens 0 1251
ENST00000552150 KRT8-004 protein_coding Homo_sapiens 0 364
ENST00000552551 KRT8-001 protein_coding Homo_sapiens 0 364
ENST00000552855 KRT73-003 protein_coding Homo_sapiens 0 324
ENST00000556193 KRT8P2-001 processed_pseudogene Homo_sapiens 2e-25 121
ENST00000560090 KRT8P23-001 processed_pseudogene Homo_sapiens 0 243
ENST00000592443 KRT8P5-001 processed_pseudogene Homo_sapiens 7e-36 156

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