C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Transcript Info
Description: collagen, type XI, alpha 2
Transcript Accession Transcript Name Contained in Gene Tax ID Strand Position Biotype
ENST00000477772 COL11A2-004 ENSG00000204248 9606 - 6:33162695-33177893 processed_transcript

Expression Patterns

Heat Map
Numeric Values
Transcript'; ColonHeartKidneyLiverMuscleOvaryPlacentaTestisENST00000477772
Transcript ID Colon Heart Kidney Liver Muscle Ovary Placenta Testis
ENST00000477772 0.033±0.00 0.018±0.00 0.069±0.00 0.058±0.00 0.030±0.00 0.199±0.00 0.030±0.01 0.285±0.00

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_0001PH CIL_0001PH_0002 CGP 6:33162681-33200688

Gene Ontology

GO IDEvidence TypeGO Description
No GO terms available.

Homologs

ENSEMBL Accession Gene Name Biotype Species E-Value Bit Score
ENSMUST00000114255 Col11a2-202 protein_coding Mus_musculus 0 1024
ENSMUST00000114252 Col11a2-201 protein_coding Mus_musculus 0 1024
ENSMUST00000087497 Col11a2-001 protein_coding Mus_musculus 0 1024
ENSMUST00000144927 Col11a2-006 retained_intron Mus_musculus 0 403
ENSMUST00000173749 Col11a2-007 processed_transcript Mus_musculus 0 228
ENSMUST00000143354 Col11a2-003 protein_coding Mus_musculus 0 228

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