C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Transcript Info
Description: high mobility group AT-hook 1
Transcript Accession Transcript Name Contained in Gene Tax ID Strand Position Biotype
ENST00000478214 HMGA1-003 ENSG00000137309 9606 + 6:34237204-34245151 processed_transcript

Homo sapiens EnsemblGRCh38

Genome
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Genes
Structures from Ensembl
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Transcripts
Structures from Ensembl
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Expression Patterns

Heat Map
Numeric Values
Transcript'; BladderBreastHeartMuscleENST00000478214
Transcript ID Bladder Breast Heart Muscle
ENST00000478214 0.543±0.00 2.330±0.00 0.377±0.00 2.058±0.00

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_000251 CIL_000251_0001 CGP 6:34018645-34246231

Gene Ontology

GO IDEvidence TypeGO Description
No GO terms available.

Homologs

ENSEMBL Accession Gene Name Biotype Species E-Value Bit Score
ENSMUST00000118570 Hmga1-003 protein_coding Mus_musculus 0 510
ENSMUST00000114888 Hmga1-002 protein_coding Mus_musculus 0 459
ENSMUST00000117254 Hmga1-004 protein_coding Mus_musculus 0 309
ENSMUST00000119486 Hmga1-006 protein_coding Mus_musculus 0 309
ENSMUST00000117600 Hmga1-001 protein_coding Mus_musculus 0 309
ENSMUST00000105046 Hmga1-rs1-001 protein_coding Mus_musculus 0 309
ENSMUST00000118599 Hmga1-005 protein_coding Mus_musculus 0 268

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