C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Transcript Info
Description: transmembrane emp24 protein transport domain containing 4
Transcript Accession Transcript Name Contained in Gene Tax ID Strand Position Biotype
ENST00000481238 TMED4-003 ENSG00000158604 9606 - 7:44579897-44582231 protein_coding

Homo sapiens EnsemblGRCh38

Genome
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Genes
Structures from Ensembl
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Transcripts
Structures from Ensembl
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Expression Patterns

Heat Map
Numeric Values
Transcript'; BladderColonHeartKidneyLiverLungOvaryPlacentaTestisENST00000481238
Transcript ID Bladder Colon Heart Kidney Liver Lung Ovary Placenta Testis
ENST00000481238 4.056±0.00 4.114±1.86 3.992±2.58 7.761±0.00 3.749±0.00 4.184±1.53 9.804±0.53 9.315±0.00 7.861±3.57

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_0000J4 CIL_0000J4_0001 CGP 7:44565417-44582287
CIL_0000J7 CIL_0000J7_0001 CGP 7:44577894-44709066

Gene Ontology

GO IDEvidence TypeGO Description
GO:0004871 IMP signal transducer activity
GO:0005783 IEA endoplasmic reticulum
GO:0006810 IEA transport
GO:0007165 IMP signal transduction
GO:0015031 IEA protein transport
GO:0016021 IEA integral component of membrane
GO:0043123 IMP positive regulation of I-kappaB kinase/NF-kappaB signaling
GO:0070062 IDA extracellular vesicular exosome

Homologs

ENSEMBL Accession Gene Name Biotype Species E-Value Bit Score
ENSMUST00000004508 Tmed4-001 protein_coding Mus_musculus 0 560
ENSMUST00000173269 Neu1-002 retained_intron Mus_musculus 0.0000007 60
ENSMUST00000034431 Tmem170-201 protein_coding Mus_musculus 0.0000007 60

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