C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Transcript Info
Description:
Transcript Accession Transcript Name Contained in Gene Tax ID Strand Position Biotype
ENST00000482002 AC005017.2-001 ENSG00000174495 9606 - 7:28279211-28279700 processed_pseudogene

Homo sapiens EnsemblGRCh38

Genome
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Genes
Structures from Ensembl
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Transcripts
Structures from Ensembl
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Expression Patterns

Heat Map
Numeric Values
Transcript'; AdrenalBrainBreastLungMuscleOvaryTestisENST00000482002
Transcript ID Adrenal Brain Breast Lung Muscle Ovary Testis
ENST00000482002 0.127±0.00 0.034±0.00 0.032±0.00 0.030±0.00 0.028±0.00 0.052±0.00 0.029±0.00

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_00091R CIL_00091R_0001 VISTA 7:27775284-28378152
CIL_0003ZL CIL_0003ZL_0001 CGP 7:27830573-28825894

Gene Ontology

GO IDEvidence TypeGO Description
No GO terms available.

Homologs

ENSEMBL Accession Gene Name Biotype Species E-Value Bit Score
ENSMUST00000132846 Ppia-001 protein_coding Mus_musculus 0 592
ENSMUST00000075723 Gm10123-001 processed_pseudogene Mus_musculus 0 588
ENSMUST00000175860 Gm6061-001 processed_pseudogene Mus_musculus 0 584
ENSMUST00000120318 Gm13493-001 processed_pseudogene Mus_musculus 0 568
ENSMUST00000090749 Ppia-005 processed_transcript Mus_musculus 0 568
ENSMUST00000119740 Gm12728-001 translated_processed_pseudogene Mus_musculus 0 560
ENSMUST00000077747 Gm9234-201 processed_pseudogene Mus_musculus 0 556
ENSMUST00000119389 Gm14046-001 processed_pseudogene Mus_musculus 0 549
ENSMUST00000155824 Ppia-003 retained_intron Mus_musculus 0 544
ENSMUST00000099961 Gm6043-201 processed_pseudogene Mus_musculus 0 534
ENSMUST00000178933 Gm5558-201 processed_pseudogene Mus_musculus 0 525
ENSMUST00000177265 Gm5777-001 processed_pseudogene Mus_musculus 0 512
ENSMUST00000137829 Ppia-002 retained_intron Mus_musculus 0 499
ENSMUST00000081336 Gm6065-201 processed_pseudogene Mus_musculus 0 490
ENSMUST00000117621 Gm13750-001 processed_pseudogene Mus_musculus 0 481
ENSMUST00000120735 Gm5883-001 processed_pseudogene Mus_musculus 0 468
ENSMUST00000186816 RP23-215C21.3-001 processed_pseudogene Mus_musculus 0 449
ENSMUST00000118678 Gm13679-001 processed_pseudogene Mus_musculus 0 449
ENSMUST00000172723 Gm5967-001 processed_pseudogene Mus_musculus 0 444
ENSMUST00000119751 Gm11469-001 processed_pseudogene Mus_musculus 0 440
ENSMUST00000117298 Gm12842-001 processed_pseudogene Mus_musculus 0 394
ENSMUST00000119162 Gm15621-001 processed_pseudogene Mus_musculus 0 372
ENSMUST00000121223 Gm12632-001 processed_pseudogene Mus_musculus 0 357
ENSMUST00000118166 Gm13454-001 processed_pseudogene Mus_musculus 0 243
ENSMUST00000069552 Gm5160-201 protein_coding Mus_musculus 4e-39 165

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