C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Transcript Info
Description: RTEL1-TNFRSF6B readthrough (NMD candidate)
Transcript Accession Transcript Name Contained in Gene Tax ID Strand Position Biotype
ENST00000482936 RTEL1-TNFRSF6B-001 ENSG00000026036 9606 + 20:63659403-63698684 nonsense_mediated_decay

Expression Patterns

No expression data.

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_0003U1 CIL_0003U1_0001 CGP 20:63639705-63696253

Gene Ontology

GO IDEvidence TypeGO Description
GO:0003676 IEA nucleic acid binding
GO:0003677 IEA DNA binding
GO:0004003 IEA ATP-dependent DNA helicase activity
GO:0005524 IEA ATP binding
GO:0005634 IEA nucleus
GO:0006139 IEA nucleobase-containing compound metabolic process
GO:0006200 IEA ATP catabolic process
GO:0008026 IEA ATP-dependent helicase activity
GO:0016818 IEA hydrolase activity, acting on acid anhydrides, in phosphorus-containing anhydrides
GO:0032508 IEA DNA duplex unwinding

Homologs

ENSEMBL Accession Gene Name Biotype Species E-Value Bit Score
ENSMUST00000108815 Rtel1-006 protein_coding Mus_musculus 0 2398
ENSMUST00000048608 Rtel1-005 protein_coding Mus_musculus 0 2398
ENSMUST00000108814 Rtel1-007 protein_coding Mus_musculus 0 2398
ENSMUST00000054622 Rtel1-001 protein_coding Mus_musculus 0 2398
ENSMUST00000098971 Rtel1-003 protein_coding Mus_musculus 0 2398
ENSMUST00000139608 Rtel1-004 retained_intron Mus_musculus 0 2065
ENSMUST00000148252 Rtel1-008 protein_coding Mus_musculus 0 1696
ENSMUST00000146273 Rtel1-002 retained_intron Mus_musculus 0 1151
ENSMUST00000130935 Rtel1-013 retained_intron Mus_musculus 0 568
ENSMUST00000153112 Rtel1-009 protein_coding Mus_musculus 0 411

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