C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Transcript Info
Description: regulator of telomere elongation helicase 1
Transcript Accession Transcript Name Contained in Gene Tax ID Strand Position Biotype
ENSMUST00000108814 Rtel1-007 ENSMUSG00000038685 10090 + 2:181319785-181356578 protein_coding

Mus musculus EnsemblGRCm38

Genome
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Genes
Structures from Ensembl
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Transcripts
Structures from Ensembl
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Expression Patterns

Heat Map
Numeric Values
Transcript'; AdiposeAdrenalBreastColonKidneyLiverLungOvaryPlacentaENSMUST00000108814
Transcript ID Adipose Adrenal Breast Colon Kidney Liver Lung Ovary Placenta
ENSMUST00000108814 1.810±0.05 1.885±0.36 1.932±0.67 1.307±0.16 1.740±0.46 1.959±0.35 1.632±0.38 2.807±0.63 1.239±0.00

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_0003U1 CIL_0003U1_0002 CGP 2:181306459-181356616

Gene Ontology

GO IDEvidence TypeGO Description
GO:0000723 IMP telomere maintenance
GO:0003677 IEA DNA binding
GO:0004003 ISS ATP-dependent DNA helicase activity
GO:0005524 ISS ATP binding
GO:0005634 IDA nucleus
GO:0006200 IEA ATP catabolic process
GO:0006281 IEA DNA repair
GO:0010569 ISS regulation of double-strand break repair via homologous recombination
GO:0032508 IEA DNA duplex unwinding
GO:0046872 IEA metal ion binding
GO:0051539 IEA 4 iron, 4 sulfur cluster binding

Homologs

ENSEMBL Accession Gene Name Biotype Species E-Value Bit Score
ENST00000318100 RTEL1-201 protein_coding Homo_sapiens 0 2287
ENST00000356810 RTEL1-012 protein_coding Homo_sapiens 0 444
ENST00000360203 RTEL1-011 protein_coding Homo_sapiens 0 2440
ENST00000370003 RTEL1-002 protein_coding Homo_sapiens 0 483
ENST00000370018 RTEL1-001 protein_coding Homo_sapiens 0 2440
ENST00000425905 RTEL1-008 protein_coding Homo_sapiens 0 337
ENST00000480273 RTEL1-TNFRSF6B-003 retained_intron Homo_sapiens 0 1123
ENST00000482936 RTEL1-TNFRSF6B-001 nonsense_mediated_decay Homo_sapiens 0 2398
ENST00000492259 RTEL1-TNFRSF6B-002 nonsense_mediated_decay Homo_sapiens 0 830
ENST00000496281 RTEL1-TNFRSF6B-004 retained_intron Homo_sapiens 0 259
ENST00000496816 RTEL1-003 nonsense_mediated_decay Homo_sapiens 0 507
ENST00000504490 RTEL1P1-001 processed_pseudogene Homo_sapiens 0 1720
ENST00000508582 RTEL1-014 protein_coding Homo_sapiens 0 2085
ENST00000622743 RTEL1-TNFRSF6B-201 protein_coding Homo_sapiens 0 2398

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