C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Transcript Info
Description: regulator of telomere elongation helicase 1
Transcript Accession Transcript Name Contained in Gene Tax ID Strand Position Biotype
ENSMUST00000139608 Rtel1-004 ENSMUSG00000038685 10090 + 2:181319762-181356578 retained_intron

Expression Patterns

Heat Map
Numeric Values
Transcript'; AdiposeAdrenalBladderBrainBreastColonHeartLiverLungMuscleOvaryPlacentaTestisENSMUST00000139608
Transcript ID Adipose Adrenal Bladder Brain Breast Colon Heart Liver Lung Muscle Ovary Placenta Testis
ENSMUST00000139608 2.336±0.45 1.138±0.33 1.663±0.00 2.701±0.80 1.981±0.69 1.978±0.37 0.468±0.00 1.919±0.72 1.564±0.00 0.557±0.15 2.636±0.73 2.083±1.01 2.135±0.16

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_0003U1 CIL_0003U1_0002 CGP 2:181306459-181356616

Gene Ontology

GO IDEvidence TypeGO Description
No GO terms available.

Homologs

ENSEMBL Accession Gene Name Biotype Species E-Value Bit Score
ENST00000318100 RTEL1-201 protein_coding Homo_sapiens 0 1954
ENST00000356810 RTEL1-012 protein_coding Homo_sapiens 0 444
ENST00000360203 RTEL1-011 protein_coding Homo_sapiens 0 2108
ENST00000370003 RTEL1-002 protein_coding Homo_sapiens 5e-34 150
ENST00000370018 RTEL1-001 protein_coding Homo_sapiens 0 2108
ENST00000425905 RTEL1-008 protein_coding Homo_sapiens 0 265
ENST00000480273 RTEL1-TNFRSF6B-003 retained_intron Homo_sapiens 0 791
ENST00000482936 RTEL1-TNFRSF6B-001 nonsense_mediated_decay Homo_sapiens 0 2065
ENST00000492259 RTEL1-TNFRSF6B-002 nonsense_mediated_decay Homo_sapiens 0 830
ENST00000496281 RTEL1-TNFRSF6B-004 retained_intron Homo_sapiens 1e-33 150
ENST00000496816 RTEL1-003 nonsense_mediated_decay Homo_sapiens 3.00004e-41 174
ENST00000504490 RTEL1P1-001 processed_pseudogene Homo_sapiens 0 1458
ENST00000508582 RTEL1-014 protein_coding Homo_sapiens 0 1753
ENST00000622743 RTEL1-TNFRSF6B-201 protein_coding Homo_sapiens 0 2065

Loading