C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Transcript Info
Description: procollagen-lysine, 2-oxoglutarate 5-dioxygenase 1
Transcript Accession Transcript Name Contained in Gene Tax ID Strand Position Biotype
ENST00000485046 PLOD1-004 ENSG00000083444 9606 + 1:11934205-11958620 processed_transcript

Homo sapiens EnsemblGRCh38

Genome
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Genes
Structures from Ensembl
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Transcripts
Structures from Ensembl
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Expression Patterns

Heat Map
Numeric Values
Transcript'; BladderBrainBreastHeartLiverLungENST00000485046
Transcript ID Bladder Brain Breast Heart Liver Lung
ENST00000485046 3.910±0.00 1.517±0.00 3.424±0.00 2.449±0.00 3.433±0.00 2.020±0.00

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_00087H CIL_00087H_0001 VISTA 1:11580820-12184055
CIL_00022Y CIL_00022Y_0002 CGP 1:11919591-11975538
CIL_00022Z CIL_00022Z_0002 CGP 1:11934205-12013514

Gene Ontology

GO IDEvidence TypeGO Description
No GO terms available.

Homologs

ENSEMBL Accession Gene Name Biotype Species E-Value Bit Score
ENSMUST00000124292 Plod1-006 retained_intron Mus_musculus 0 996
ENSMUST00000019199 Plod1-001 protein_coding Mus_musculus 0 996
ENSMUST00000105712 Plod1-007 protein_coding Mus_musculus 0 671
ENSMUST00000132075 Plod1-002 processed_transcript Mus_musculus 5e-26 122

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