C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Transcript Info
Description: cadherin 24, type 2
Transcript Accession Transcript Name Contained in Gene Tax ID Strand Position Biotype
ENST00000487137 CDH24-202 ENSG00000139880 9606 - 14:23047062-23057538 protein_coding

Homo sapiens EnsemblGRCh38

Genome
Exciting message
Genes
Structures from Ensembl
Connecting
Transcripts
Structures from Ensembl
Connecting
Powered by Dalliance 0.11.11

Expression Patterns

Heat Map
Numeric Values
Transcript'; AdiposeBrainBreastColonKidneyLiverLungOvaryPlacentaENST00000487137
Transcript ID Adipose Brain Breast Colon Kidney Liver Lung Ovary Placenta
ENST00000487137 0.625±0.00 0.968±0.00 0.716±0.00 0.420±0.00 0.218±0.00 0.112±0.00 0.349±0.14 2.352±0.26 0.750±0.51

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_0006MR CIL_0006MR_0001 CGP 14:23042167-23057538

Gene Ontology

GO IDEvidence TypeGO Description
GO:0005509 IDA:IEA calcium ion binding
GO:0005886 TAS plasma membrane
GO:0005911 IDA cell-cell junction
GO:0007156 IEA homophilic cell adhesion via plasma membrane adhesion molecules
GO:0008013 IPI beta-catenin binding
GO:0016020 IEA membrane
GO:0016021 IEA integral component of membrane
GO:0016337 IDA single organismal cell-cell adhesion
GO:0034329 TAS cell junction assembly
GO:0034332 TAS adherens junction organization
GO:0045216 TAS cell-cell junction organization
GO:0045294 IPI alpha-catenin binding
GO:0070097 IPI delta-catenin binding

Homologs

ENSEMBL Accession Gene Name Biotype Species E-Value Bit Score
ENSMUST00000067784 Cdh24-201 protein_coding Mus_musculus 0 3238
ENSMUST00000173083 Gm20726-201 protein_coding Mus_musculus 0 309
ENSDART00000002279 cdh11-201 protein_coding Danio_rerio 0 239
ENSDART00000111261 protein_coding Danio_rerio 0 228
ENSDART00000138769 protein_coding Danio_rerio 0 228
ENSDART00000127332 cdh11-001 protein_coding Danio_rerio 0 213
ENSDART00000054552 CDH8-201 protein_coding Danio_rerio 2e-25 122

Loading