C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Transcript Info
Description: cadherin 11, osteoblast
Transcript Accession Transcript Name Contained in Gene Tax ID Strand Position Biotype
ENSDART00000002279 cdh11-201 ENSDARG00000021442 7955 - 7:44733496-44760755 protein_coding

Danio rerio EnsemblZv9

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Genes
Structures from Ensembl
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Transcripts
Structures from Ensembl
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Expression Patterns

Heat Map
Numeric Values
Transcript'; BrainHeartKidneyMuscleENSDART00000002279
Transcript ID Brain Heart Kidney Muscle
ENSDART00000002279 11.961±2.01 0.122±0.05 2.569±0.00 1.214±0.00

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_0006SB CIL_0006SB_0001 CGP 7:44733496-45486203

Gene Ontology

GO IDEvidence TypeGO Description
GO:0005509 IEA calcium ion binding
GO:0005886 IEA plasma membrane
GO:0007155 IEA cell adhesion
GO:0007156 IEA homophilic cell adhesion
GO:0016020 IEA membrane
GO:0016021 IEA integral to membrane
GO:0048840 IMP otolith development

Homologs

ENSEMBL Accession Gene Name Biotype Species E-Value Bit Score
ENSMUST00000067784 Cdh24-201 protein_coding Mus_musculus 0 228
ENSMUST00000075190 Cdh11-201 protein_coding Mus_musculus 0 453
ENST00000267383 CDH24-006 protein_coding Homo_sapiens 0 239
ENST00000268603 CDH11-001 protein_coding Homo_sapiens 0 220
ENST00000394156 CDH11-002 protein_coding Homo_sapiens 0 220
ENST00000397359 CDH24-201 protein_coding Homo_sapiens 0 239
ENST00000487137 CDH24-202 protein_coding Homo_sapiens 0 239
ENST00000554034 CDH24-007 protein_coding Homo_sapiens 0 239
ENST00000610348 CDH24-203 protein_coding Homo_sapiens 0.0000000000002 82

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