C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Transcript Info
Description: transient receptor potential cation channel, subfamily C, member 4
Transcript Accession Transcript Name Contained in Gene Tax ID Strand Position Biotype
ENST00000488717 TRPC4-005 ENSG00000133107 9606 - 13:37636843-37783333 nonsense_mediated_decay

Expression Patterns

Heat Map
Numeric Values
Transcript'; BrainColonKidneyPlacentaTestisENST00000488717
Transcript ID Brain Colon Kidney Placenta Testis
ENST00000488717 0.387±0.00 0.104±0.00 0.191±0.00 0.280±0.06 0.189±0.01

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_0006CR CIL_0006CR_0002 CGP 13:37562583-37870425
CIL_0006CS CIL_0006CS_0002 CGP 13:37636636-38363619

Gene Ontology

GO IDEvidence TypeGO Description
GO:0005515 IPI:IEA protein binding
GO:0005886 IDA plasma membrane
GO:0005911 IDA cell-cell junction
GO:0006816 TAS calcium ion transport
GO:0007411 TAS axon guidance
GO:0008013 IPI beta-catenin binding
GO:0009986 IDA cell surface
GO:0015279 IMP store-operated calcium channel activity
GO:0016323 IDA basolateral plasma membrane
GO:0030863 IDA cortical cytoskeleton
GO:0034220 TAS ion transmembrane transport
GO:0034704 IDA calcium channel complex
GO:0045296 IPI cadherin binding
GO:0055085 TAS transmembrane transport
GO:0070509 IDA calcium ion import
GO:0070588 TAS calcium ion transmembrane transport

Homologs

ENSEMBL Accession Gene Name Biotype Species E-Value Bit Score
ENSMUST00000029311 Trpc4-201 protein_coding Mus_musculus 0 1986

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