C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Transcript Info
Description: phosphodiesterase 9A
Transcript Accession Transcript Name Contained in Gene Tax ID Strand Position Biotype
ENST00000489319 PDE9A-023 ENSG00000160191 9606 + 21:42756775-42775509 retained_intron

Expression Patterns

Heat Map
Numeric Values
Transcript'; ColonMuscleENST00000489319
Transcript ID Colon Muscle
ENST00000489319 0.655±0.00 0.296±0.25

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_0008QJ CIL_0008QJ_0001 VISTA 21:42290762-42894212
CIL_0001JT CIL_0001JT_0001 CGP 21:42496008-42775509
CIL_0001D2 CIL_0001D2_0002 CGP 21:42653636-42879568

Gene Ontology

GO IDEvidence TypeGO Description
No GO terms available.

Homologs

ENSEMBL Accession Gene Name Biotype Species E-Value Bit Score
ENSMUST00000137927 Pde9a-005 nonsense_mediated_decay Mus_musculus 0 1083
ENSMUST00000127929 Pde9a-002 protein_coding Mus_musculus 0 1083
ENSMUST00000134525 Pde9a-006 protein_coding Mus_musculus 0 1083
ENSMUST00000131417 Pde9a-004 nonsense_mediated_decay Mus_musculus 0 1083
ENSMUST00000143549 Pde9a-003 nonsense_mediated_decay Mus_musculus 0 1083
ENSMUST00000047168 Pde9a-001 protein_coding Mus_musculus 0 1083
ENSMUST00000124902 Pde9a-008 nonsense_mediated_decay Mus_musculus 0 797
ENSMUST00000154567 Pde9a-007 retained_intron Mus_musculus 0 750
ENSDART00000111973 CABZ01044346.1-201 protein_coding Danio_rerio 0 466
ENSDART00000114937 CR848033.1-201 protein_coding Danio_rerio 0 451
ENSMUST00000155395 Pde9a-012 retained_intron Mus_musculus 0 438
ENSMUST00000154392 Pde9a-013 protein_coding Mus_musculus 0 361
ENSMUST00000130547 Pde9a-011 retained_intron Mus_musculus 0 241
ENSMUST00000155113 Pde9a-014 processed_transcript Mus_musculus 0.00000000005 75

Loading