C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Transcript Info

Description: signal sequence receptor, alpha
Transcript Accession Transcript Name Contained in Gene Tax ID Strand Position Biotype
ENST00000489567 SSR1-006 ENSG00000124783 9606 - 6:7288682-7313174 protein_coding

Expression Patterns

No expression data.

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_000817 CIL_000817_0001 VISTA 6:6863717-7465821
CIL_0003S7 CIL_0003S7_0001 CGP 6:7107597-7347446
CIL_0007T6 CIL_0007T6_0001 VISTA 6:7260927-7862502
CIL_00004W CIL_00004W_0001 CGP 6:7268306-7389743

Gene Ontology

GO IDEvidence TypeGO Description
GO:0005783 IDA endoplasmic reticulum
GO:0005789 IEA endoplasmic reticulum membrane

Homologs

ENSEMBL Accession Gene Name Biotype Species E-Value Bit Score
ENSMUST00000021864 Ssr1-201 protein_coding Mus_musculus 0 721
ENSMUST00000020411 Osbpl5-201 protein_coding Mus_musculus 0.0001 53
ENSMUST00000137627 Osbpl5-003 retained_intron Mus_musculus 0.0001 53
ENSMUST00000121409 Osbpl5-002 protein_coding Mus_musculus 0.0001 53
ENSMUST00000119499 Osbpl5-001 protein_coding Mus_musculus 0.0001 53

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