C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Transcript Info
Description: ribosomal protein L37a
Transcript Accession Transcript Name Contained in Gene Tax ID Strand Position Biotype
ENST00000491306 RPL37A-001 ENSG00000197756 9606 + 2:216498189-216504086 protein_coding

Expression Patterns

Heat Map
Numeric Values
Transcript'; BladderBrainENST00000491306
Transcript ID Bladder Brain
ENST00000491306 4.642±0.00 6.006±1.34

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_0005MF CIL_0005MF_0001 CGP 2:216498189-216664436

Gene Ontology

GO IDEvidence TypeGO Description
GO:0000184 TAS nuclear-transcribed mRNA catabolic process, nonsense-mediated decay
GO:0003735 IEA:NAS structural constituent of ribosome
GO:0005622 IEA intracellular
GO:0005634 IDA nucleus
GO:0005829 TAS cytosol
GO:0005840 IEA ribosome
GO:0005925 IDA focal adhesion
GO:0006412 IEA:NAS translation
GO:0006413 TAS translational initiation
GO:0006414 TAS translational elongation
GO:0006415 TAS translational termination
GO:0006614 TAS SRP-dependent cotranslational protein targeting to membrane
GO:0010467 TAS gene expression
GO:0016032 TAS viral process
GO:0016070 TAS RNA metabolic process
GO:0016071 TAS mRNA metabolic process
GO:0019058 TAS viral life cycle
GO:0019083 TAS viral transcription
GO:0022625 IDA cytosolic large ribosomal subunit
GO:0044267 TAS cellular protein metabolic process
GO:0044822 IDA poly(A) RNA binding
GO:0046872 IEA metal ion binding
GO:0070062 IDA extracellular vesicular exosome

Homologs

ENSEMBL Accession Gene Name Biotype Species E-Value Bit Score
ENSMUST00000059980 Rpl37a-201 protein_coding Mus_musculus 0 424
ENSMUST00000099371 Gm4149-201 pseudogene Mus_musculus 0 394
ENSMUST00000117690 Gm14173-001 processed_pseudogene Mus_musculus 0 370
ENSMUST00000165488 Gm4613-201 processed_pseudogene Mus_musculus 0 346
ENSMUST00000122133 Gm14251-001 processed_pseudogene Mus_musculus 0 339
ENSMUST00000080671 RP24-511K23.2-001 processed_pseudogene Mus_musculus 0 287
ENSMUST00000118443 Gm11285-001 unprocessed_pseudogene Mus_musculus 0 285
ENSMUST00000120162 Gm13875-001 processed_pseudogene Mus_musculus 0 285
ENSMUST00000119187 Gm16106-001 processed_pseudogene Mus_musculus 0 274
ENSMUST00000118308 Gm13879-001 processed_pseudogene Mus_musculus 0 226
ENSMUST00000173269 Neu1-002 retained_intron Mus_musculus 0.000005 58
ENSMUST00000034431 Tmem170-201 protein_coding Mus_musculus 0.000005 58

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