C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Transcript Info
Description: tRNA-yW synthesizing protein 5
Transcript Accession Transcript Name Contained in Gene Tax ID Strand Position Biotype
ENST00000493181 TYW5-004 ENSG00000162971 9606 - 2:199942058-199955502 retained_intron

Homo sapiens EnsemblGRCh38

Genome
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Genes
Structures from Ensembl
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Transcripts
Structures from Ensembl
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Expression Patterns

Heat Map
Numeric Values
Transcript'; AdrenalBladderBreastColonHeartLiverLungOvaryENST00000493181
Transcript ID Adrenal Bladder Breast Colon Heart Liver Lung Ovary
ENST00000493181 0.751±0.00 0.457±0.00 0.694±0.00 0.846±0.00 0.273±0.00 0.445±0.00 0.893±0.00 0.567±0.00

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_0002K2 CIL_0002K2_0001 CGP 2:199911256-199955935
CIL_0000JI CIL_0000JI_0002 CGP 2:199929975-200008540

Gene Ontology

GO IDEvidence TypeGO Description
No GO terms available.

Homologs

ENSEMBL Accession Gene Name Biotype Species E-Value Bit Score
ENSMUST00000162686 Tyw5-001 protein_coding Mus_musculus 0 259
ENSMUST00000161780 Tyw5-003 protein_coding Mus_musculus 0 235
ENSMUST00000160118 Tyw5-006 nonsense_mediated_decay Mus_musculus 0 235
ENSMUST00000079998 Tyw5-004 nonsense_mediated_decay Mus_musculus 0 235
ENSMUST00000097732 Tyw5-002 retained_intron Mus_musculus 0 235
ENSMUST00000160837 Tyw5-007 protein_coding Mus_musculus 0 224
ENSMUST00000163039 Tyw5-009 processed_transcript Mus_musculus 1.99965e-42 180
ENSMUST00000034431 Tmem170-201 protein_coding Mus_musculus 0.00000002 68
ENSMUST00000173269 Neu1-002 retained_intron Mus_musculus 0.000003 60

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