C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Transcript Info
Description: laminin, gamma 2
Transcript Accession Transcript Name Contained in Gene Tax ID Strand Position Biotype
ENST00000493293 LAMC2-003 ENSG00000058085 9606 + 1:183186238-183241261 protein_coding

Expression Patterns

Heat Map
Numeric Values
Transcript'; BrainBreastHeartKidneyLiverOvaryTestisENST00000493293
Transcript ID Brain Breast Heart Kidney Liver Ovary Testis
ENST00000493293 0.098±0.00 1.419±0.00 0.168±0.00 0.015±0.00 0.079±0.00 3.234±2.40 0.402±0.00

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_0001W9 CIL_0001W9_0002 CGP 1:183023460-183244900
CIL_0001BK CIL_0001BK_0002 CGP 1:183186238-183418602

Gene Ontology

GO IDEvidence TypeGO Description
GO:0005515 IEA protein binding
GO:0005576 TAS extracellular region
GO:0007155 IEA cell adhesion
GO:0008544 TAS epidermis development
GO:0022617 TAS extracellular matrix disassembly
GO:0030198 TAS extracellular matrix organization
GO:0031581 TAS hemidesmosome assembly
GO:0034329 TAS cell junction assembly

Homologs

ENSEMBL Accession Gene Name Biotype Species E-Value Bit Score
ENSMUST00000027753 Lamc2-201 protein_coding Mus_musculus 0 3363
ENSMUST00000185356 Lamc2-001 protein_coding Mus_musculus 0 3363
ENSMUST00000188831 Lamc2-002 retained_intron Mus_musculus 0 385

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