C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Transcript Info
Description: ribosomal protein L7 pseudogene 23
Transcript Accession Transcript Name Contained in Gene Tax ID Strand Position Biotype
ENST00000493874 RPL7P23-001 ENSG00000244363 9606 + 5:77582376-77583122 processed_pseudogene

Expression Patterns

Heat Map
Numeric Values
Transcript'; AdiposeAdrenalBrainBreastColonHeartKidneyLiverLungMuscleOvaryPlacentaTestisENST00000493874
Transcript ID Adipose Adrenal Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENST00000493874 0.210±0.00 0.310±0.00 0.063±0.01 0.164±0.02 0.224±0.11 0.035±0.00 0.074±0.00 0.050±0.02 0.293±0.05 0.114±0.00 0.558±0.50 0.602±0.49 0.230±0.16

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_000979 CIL_000979_0001 VISTA 5:77339400-77940441
CIL_00091A CIL_00091A_0001 VISTA 5:77345011-77945571
CIL_0008DK CIL_0008DK_0001 VISTA 5:77424780-78026683
CIL_00091B CIL_00091B_0001 VISTA 5:77543897-78144918
CIL_0007SL CIL_0007SL_0001 VISTA 5:77545919-78149307
CIL_00091C CIL_00091C_0001 VISTA 5:77551756-78152775
CIL_0007OX CIL_0007OX_0001 UCNEbase 5:77560331-77741345

Gene Ontology

GO IDEvidence TypeGO Description
No GO terms available.

Homologs

ENSEMBL Accession Gene Name Biotype Species E-Value Bit Score
ENSMUST00000027054 Gm5045-201 processed_pseudogene Mus_musculus 0 798
ENSMUST00000118173 Gm6274-001 processed_pseudogene Mus_musculus 0 760
ENSMUST00000118692 Gm12090-001 processed_pseudogene Mus_musculus 0 669
ENSMUST00000118553 Gm8534-001 processed_pseudogene Mus_musculus 0 664
ENSMUST00000122189 Gm5392-001 processed_pseudogene Mus_musculus 0 612
ENSMUST00000148424 1700073E17Rik-001 transcribed_processed_pseudogene Mus_musculus 0 604
ENSMUST00000152419 1700073E17Rik-002 processed_transcript Mus_musculus 0 604
ENSMUST00000117062 Gm15159-001 processed_pseudogene Mus_musculus 0 556
ENSMUST00000136180 1700073E17Rik-004 processed_transcript Mus_musculus 0 501

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