C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Transcript Info
Description: collagen, type XXV, alpha 1
Transcript Accession Transcript Name Contained in Gene Tax ID Strand Position Biotype
ENST00000494183 COL25A1-004 ENSG00000188517 9606 - 4:108810721-109302367 nonsense_mediated_decay

Expression Patterns

Heat Map
Numeric Values
Transcript'; BreastColonHeartKidneyOvaryTestisENST00000494183
Transcript ID Breast Colon Heart Kidney Ovary Testis
ENST00000494183 0.271±0.00 0.362±0.00 0.024±0.02 0.683±0.00 0.076±0.00 1.445±0.00

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_000872 CIL_000872_0001 VISTA 4:108310752-108912309
CIL_0008PU CIL_0008PU_0001 VISTA 4:108672054-109274138

Gene Ontology

GO IDEvidence TypeGO Description
GO:0001540 IEA beta-amyloid binding
GO:0005887 IEA integral component of plasma membrane

Homologs

ENSEMBL Accession Gene Name Biotype Species E-Value Bit Score
ENSMUST00000183368 Col25a1-004 nonsense_mediated_decay Mus_musculus 0 1925
ENSMUST00000080335 Col25a1-002 protein_coding Mus_musculus 0 1002
ENSMUST00000106353 Col25a1-001 protein_coding Mus_musculus 0 628
ENSMUST00000143830 Col25a1-003 retained_intron Mus_musculus 0 553

Loading