C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Transcript Info
Description: B-Raf proto-oncogene, serine/threonine kinase
Transcript Accession Transcript Name Contained in Gene Tax ID Strand Position Biotype
ENST00000496384 BRAF-003 ENSG00000157764 9606 - 7:140719327-140783157 protein_coding

Homo sapiens EnsemblGRCh38

Genome
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Genes
Structures from Ensembl
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Transcripts
Structures from Ensembl
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Expression Patterns

Heat Map
Numeric Values
Transcript'; BrainBreastColonKidneyLungMuscleOvaryPlacentaENST00000496384
Transcript ID Brain Breast Colon Kidney Lung Muscle Ovary Placenta
ENST00000496384 3.070±0.46 4.610±0.00 1.626±0.00 3.939±0.00 2.224±0.00 0.808±0.00 2.454±0.65 1.477±0.00

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_00039Z CIL_00039Z_0001 CGP 7:140673153-140722790
CIL_00039Y CIL_00039Y_0001 CGP 7:140690777-140924764
CIL_000605 CIL_000605_0002 CGP 7:140719327-141015228

Gene Ontology

GO IDEvidence TypeGO Description
GO:0004672 IEA protein kinase activity
GO:0004713 IEA protein tyrosine kinase activity
GO:0005524 IEA ATP binding
GO:0006468 IEA protein phosphorylation
GO:0016772 IEA transferase activity, transferring phosphorus-containing groups

Homologs

ENSEMBL Accession Gene Name Biotype Species E-Value Bit Score
ENSMUST00000002487 Braf-001 protein_coding Mus_musculus 0 3059
ENSMUST00000101497 Braf-002 protein_coding Mus_musculus 0 1661
ENSMUST00000167073 Braf-003 retained_intron Mus_musculus 0 329
ENSMUST00000167169 Braf-004 retained_intron Mus_musculus 0 302
ENSMUST00000135671 Ndufb2-001 protein_coding Mus_musculus 5e-29 135
ENSMUST00000135239 Ndufb2-006 processed_transcript Mus_musculus 2e-22 113

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