C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Transcript Info
Description:
Transcript Accession Transcript Name Contained in Gene Tax ID Strand Position Biotype
ENST00000496953 RP11-641C17.2-001 ENSG00000232407 9606 - 3:60690225-60690719 processed_pseudogene

Expression Patterns

Heat Map
Numeric Values
Transcript'; AdiposeAdrenalBladderBrainBreastColonHeartKidneyLiverLungMuscleOvaryPlacentaTestisENST00000496953
Transcript ID Adipose Adrenal Bladder Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENST00000496953 0.426±0.00 1.086±0.00 0.672±0.00 0.068±0.00 0.129±0.00 0.353±0.00 0.087±0.00 0.129±0.00 0.334±0.13 0.514±0.00 0.084±0.00 0.058±0.01 0.135±0.00 0.092±0.02

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_00034H CIL_00034H_0001 CGP 3:58717365-61251459

Gene Ontology

GO IDEvidence TypeGO Description
No GO terms available.

Homologs

ENSEMBL Accession Gene Name Biotype Species E-Value Bit Score
ENSMUST00000175860 Gm6061-001 processed_pseudogene Mus_musculus 0 577
ENSMUST00000132846 Ppia-001 protein_coding Mus_musculus 0 577
ENSMUST00000075723 Gm10123-001 processed_pseudogene Mus_musculus 0 568
ENSMUST00000120318 Gm13493-001 processed_pseudogene Mus_musculus 0 562
ENSMUST00000077747 Gm9234-201 processed_pseudogene Mus_musculus 0 549
ENSMUST00000119389 Gm14046-001 processed_pseudogene Mus_musculus 0 534
ENSMUST00000081336 Gm6065-201 processed_pseudogene Mus_musculus 0 527
ENSMUST00000119740 Gm12728-001 translated_processed_pseudogene Mus_musculus 0 525
ENSMUST00000075293 E030024N20Rik-001 processed_pseudogene Mus_musculus 0 520
ENSMUST00000099961 Gm6043-201 processed_pseudogene Mus_musculus 0 508
ENSMUST00000120735 Gm5883-001 processed_pseudogene Mus_musculus 0 499
ENSMUST00000119751 Gm11469-001 processed_pseudogene Mus_musculus 0 481
ENSMUST00000117621 Gm13750-001 processed_pseudogene Mus_musculus 0 472
ENSMUST00000177265 Gm5777-001 processed_pseudogene Mus_musculus 0 472
ENSMUST00000121819 Gm6044-001 processed_pseudogene Mus_musculus 0 448
ENSMUST00000186816 RP23-215C21.3-001 processed_pseudogene Mus_musculus 0 427
ENSMUST00000172723 Gm5967-001 processed_pseudogene Mus_musculus 0 412
ENSMUST00000137540 Gclm-003 processed_transcript Mus_musculus 0 268
ENSMUST00000135789 Ppia-004 retained_intron Mus_musculus 0 209
ENSMUST00000185012 Gm12728-003 protein_coding Mus_musculus 0 207
ENSMUST00000184254 Gm12728-002 protein_coding Mus_musculus 0 207
ENSMUST00000137829 Ppia-002 retained_intron Mus_musculus 3e-25 119

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