C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Region Summary
CIL_00034H_0001 (Click to Hide/Show)
Source ID Type Tax ID Position
ENSG00000163689-ENSG00000189283 CGP 9606 3:58717365-61251459
GeneTranscriptPositionBiotype
ENSG00000163689 (C3orf67)
chromosome 3 open reading frame 67 		ENST00000295966 (C3orf67-001) 58742006-59050084 protein_coding
ENST00000460459 (C3orf67-012) 58727970-58753863 nonsense_mediated_decay
ENST00000468415 (C3orf67-002) 58753700-59050032 nonsense_mediated_decay
ENST00000470454 (C3orf67-011) 58717367-58753843 nonsense_mediated_decay
ENST00000471288 (C3orf67-006) 58913760-59050050 protein_coding
ENST00000472469 (C3orf67-004) 58861228-59050012 protein_coding
ENST00000478363 (C3orf67-013) 58953487-59046311 processed_transcript
ENST00000479931 (C3orf67-005) 58887346-59049759 nonsense_mediated_decay
ENST00000482387 (C3orf67-003) 58742010-58937762 protein_coding
ENST00000484535 (C3orf67-009) 58725868-58849226 nonsense_mediated_decay
ENST00000486145 (C3orf67-010) 58717365-58831725 protein_coding
ENST00000491845 (C3orf67-007) 58913570-59049991 protein_coding
ENST00000495572 (C3orf67-008) 58753703-58831739 nonsense_mediated_decay
ENST00000619205 (C3orf67-201) 58753701-59050032 protein_coding
ENSG00000212211 (U3)
Small nucleolar RNA U3 		ENST00000390909 (U3.1-223) 60856389-60856605 snoRNA
ENSG00000225673 (RP11-641C17.3)
 ENST00000460282 (RP11-641C17.3-001) 60730055-60730644 processed_pseudogene
ENSG00000232407 (RP11-641C17.2)
 ENST00000496953 (RP11-641C17.2-001) 60690225-60690719 processed_pseudogene
ENSG00000240097 (RP11-641C17.4)
 ENST00000467363 (RP11-641C17.4-001) 60616822-60618079 processed_pseudogene
ENSG00000241804 (RP11-719N22.1)
 ENST00000482313 (RP11-719N22.1-001) 59535863-59536415 processed_pseudogene
ENSG00000242428 (C3orf67-AS1)
C3orf67 antisense RNA 1 		ENST00000463703 (C3orf67-AS1-004) 58824471-58970660 antisense
ENST00000482372 (C3orf67-AS1-003) 58824471-59019093 antisense
ENST00000492031 (C3orf67-AS1-002) 58824441-58970728 antisense
ENST00000493123 (C3orf67-AS1-001) 58824437-59017637 antisense
ENSG00000242545 (RP11-719N22.2)
 ENST00000486137 (RP11-719N22.2-001) 59464330-59510678 lincRNA
ENSG00000243295 (CTD-2185K10.1)
 ENST00000487624 (CTD-2185K10.1-001) 59065150-59119509 lincRNA
ENSG00000244183 (RP11-641C17.1)
 ENST00000483456 (RP11-641C17.1-001) 60732144-60732636 processed_pseudogene
ENSG00000277592 (Metazoa_SRP)
Metazoan signal recognition particle RNA 		ENST00000611926 (Metazoa_SRP.1-439) 59584169-59584445 misc_RNA

Homo sapiens Ensembl (GRCh38)

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CIL_00034H_0002 (Click to Hide/Show)
Source ID Type Tax ID Position
ENSMUSG00000021747-ENSMUSG00000060579 CGP 10090 14:8431192-11162035
GeneTranscriptPositionBiotype
ENSMUSG00000021747 (4930452B06Rik)
RIKEN cDNA 4930452B06 gene 		ENSMUST00000102996 (4930452B06Rik-001) 8431192-8666240 protein_coding
ENSMUSG00000045799 (Gm9800)
predicted gene 9800 		ENSMUST00000052615 (Gm9800-201) 8799589-8800504 pseudogene
ENSMUSG00000060579 (Fhit)
fragile histidine triad gene 		ENSMUST00000160340 (Fhit-002) 9550100-11162035 protein_coding
ENSMUST00000160956 (Fhit-004) 9870107-11162035 protein_coding
ENSMUST00000161179 (Fhit-005) 9763680-11125179 retained_intron
ENSMUST00000161302 (Fhit-001) 9550092-10453458 protein_coding
ENSMUST00000161895 (Fhit-006) 9573488-11125591 protein_coding
ENSMUST00000162278 (Fhit-003) 9550100-11162032 protein_coding
ENSMUST00000162817 (Fhit-007) 9763787-11125562 protein_coding
ENSMUST00000179394 (Fhit-201) 9550393-10421597 protein_coding
ENSMUSG00000089686 (Mnd1-ps)
Mnd1 retrotransposed pseudogene 		ENSMUST00000162462 (Mnd1-ps-001) 9886026-9886629 processed_pseudogene
ENSMUSG00000089795 (Hmgb3-ps)
Hmgb3 retrotransposed pseudogene 		ENSMUST00000162465 (Hmgb3-ps-001) 9863102-9863702 processed_pseudogene
ENSMUSG00000089833 (Fhitos)
fragile histidine triad gene, opposite strand 		ENSMUST00000160149 (Fhitos-001) 10738553-10779001 antisense
ENSMUSG00000097898 (4930455B14Rik)
RIKEN cDNA 4930455B14 gene 		ENSMUST00000180444 (4930455B14Rik-201) 8666390-8673320 lincRNA
ENSMUST00000181914 (4930455B14Rik-202) 8666390-8673378 lincRNA

Mus musculus Ensembl (GRCm38)

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Expression Patterns

Heat Map
Heat Map (Expressed Only)
Numeric Values
Region; Gene Transcript'; AdiposeAdrenalBladderBrainBreastColonHeartKidneyLiverLungMuscleOvaryPlacentaTestis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
Region; Gene Transcript'; AdiposeAdrenalBladderBrainBreastColonHeartKidneyLiverLungMuscleOvaryPlacentaTestisCIL_00034H_0001ENSG00000163689ENST00000295966ENST00000468415ENST00000471288ENST00000472469ENST00000479931ENST00000482387ENST00000484535ENST00000486145ENST00000491845ENST00000619205ENSG00000212211ENST00000390909ENSG00000225673ENST00000460282ENSG00000232407ENST00000496953ENSG00000240097ENST00000467363ENSG00000241804ENST00000482313ENSG00000242428ENST00000463703ENST00000482372ENST00000492031ENSG00000242545ENST00000486137ENSG00000243295ENST00000487624ENSG00000244183ENST00000483456ENSG00000277592ENST00000611926CIL_00034H_0002ENSMUSG00000021747ENSMUST00000102996ENSMUSG00000045799ENSMUST00000052615ENSMUSG00000060579ENSMUST00000160340ENSMUST00000160956ENSMUST00000161179ENSMUST00000161302ENSMUST00000161895ENSMUST00000162278ENSMUST00000162817ENSMUST00000179394ENSMUSG00000089686ENSMUST00000162462ENSMUSG00000089795ENSMUST00000162465ENSMUSG00000089833ENSMUST00000160149ENSMUSG00000097898ENSMUST00000180444
Gene Transcript Adipose Adrenal Bladder Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENSG00000163689 ENST00000295966 0.045±0.00 N/A N/A N/A N/A N/A N/A N/A N/A 0.344±0.00 N/A 0.100±0.04 N/A 2.590±0.00
ENST00000460459 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000468415 N/A 0.014±0.00 N/A N/A 0.037±0.00 N/A 0.008±0.00 0.125±0.00 N/A N/A N/A 0.059±0.03 N/A N/A
ENST00000470454 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000471288 N/A N/A N/A N/A 0.118±0.00 0.538±0.11 N/A N/A 0.218±0.00 0.488±0.00 N/A N/A 0.172±0.00 N/A
ENST00000472469 N/A 0.019±0.00 N/A 0.091±0.00 0.018±0.00 0.072±0.00 0.010±0.00 N/A N/A N/A N/A N/A N/A N/A
ENST00000478363 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000479931 N/A N/A 0.173±0.00 N/A N/A 0.190±0.00 N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000482387 N/A N/A N/A 0.117±0.02 0.154±0.00 0.039±0.00 N/A 0.080±0.00 N/A N/A N/A 0.173±0.10 0.107±0.01 1.886±0.00
ENST00000484535 0.055±0.00 0.054±0.00 N/A N/A N/A 0.050±0.00 0.032±0.00 N/A N/A 0.074±0.00 0.008±0.00 N/A 0.135±0.00 3.048±0.00
ENST00000486145 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A 0.379±0.26 N/A
ENST00000491845 N/A N/A N/A N/A N/A N/A N/A 0.114±0.00 N/A N/A N/A 0.336±0.00 N/A N/A
ENST00000495572 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000619205 N/A 0.015±0.00 N/A N/A 0.039±0.00 N/A 0.009±0.00 0.129±0.00 N/A N/A N/A 0.069±0.04 0.057±0.00 5.378±0.00
ENSG00000212211 ENST00000390909 N/A N/A 4.505±0.00 N/A 0.646±0.00 N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENSG00000225673 ENST00000460282 N/A N/A 0.542±0.00 N/A 0.474±0.36 0.723±0.00 0.192±0.00 0.117±0.00 0.054±0.01 N/A 0.020±0.00 1.019±0.00 N/A 0.036±0.00
ENSG00000232407 ENST00000496953 0.426±0.00 1.086±0.00 0.672±0.00 0.068±0.00 0.129±0.00 0.353±0.00 0.087±0.00 0.129±0.00 0.334±0.13 0.514±0.00 0.084±0.00 0.058±0.01 0.135±0.00 0.092±0.02
ENSG00000240097 ENST00000467363 N/A N/A N/A 0.022±0.00 N/A 0.096±0.00 0.052±0.05 N/A N/A N/A N/A N/A N/A N/A
ENSG00000241804 ENST00000482313 N/A N/A N/A N/A N/A N/A 0.047±0.00 N/A N/A N/A N/A 0.049±0.00 N/A N/A
ENSG00000242428 ENST00000463703 N/A N/A N/A 0.490±0.00 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000482372 N/A N/A N/A N/A 0.048±0.00 N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000492031 N/A N/A N/A 1.034±0.00 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000493123 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENSG00000242545 ENST00000486137 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A 0.054±0.00
ENSG00000243295 ENST00000487624 0.105±0.00 0.064±0.00 N/A 0.137±0.00 0.214±0.00 N/A 0.040±0.00 0.086±0.00 N/A N/A N/A 0.045±0.00 N/A 0.330±0.00
ENSG00000244183 ENST00000483456 N/A N/A 0.459±0.00 N/A 0.477±0.41 N/A 0.073±0.00 N/A N/A 0.897±0.00 N/A 0.074±0.00 0.072±0.00 0.296±0.00
ENSG00000277592 ENST00000611926 0.210±0.00 0.832±0.00 N/A 0.422±0.00 0.404±0.00 0.073±0.00 0.285±0.00 0.239±0.00 N/A 0.078±0.00 N/A N/A N/A 0.269±0.15
Gene Transcript Adipose Adrenal Bladder Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENSMUSG00000021747 ENSMUST00000102996 0.163±0.12 0.346±0.09 1.824±0.93 1.129±0.61 0.069±0.04 0.471±0.27 0.883±0.71 0.349±0.07 0.558±0.41 0.993±0.14 0.026±0.01 0.760±0.33 0.250±0.07 3.214±1.53
ENSMUSG00000045799 ENSMUST00000052615 4.540±2.01 22.730±8.36 38.200±32.97 38.562±45.95 4.808±2.36 8.551±6.80 3.284±0.58 16.492±6.92 38.238±53.91 10.242±1.19 0.284±0.20 27.605±28.02 2.302±2.84 2.601±1.25
ENSMUSG00000060579 ENSMUST00000160340 N/A 0.369±0.03 N/A N/A N/A N/A 0.283±0.19 N/A N/A N/A 0.251±0.00 N/A N/A 0.290±0.12
ENSMUST00000160956 N/A 2.099±0.42 N/A N/A N/A N/A 1.252±0.00 5.350±0.00 N/A N/A 0.114±0.00 1.925±0.00 N/A N/A
ENSMUST00000161179 N/A N/A N/A N/A 0.795±0.00 N/A N/A N/A 0.502±0.00 N/A N/A N/A N/A N/A
ENSMUST00000161302 2.253±0.98 0.883±0.28 3.458±0.88 1.137±0.37 1.058±0.42 1.709±1.29 0.620±0.36 9.761±0.94 2.444±1.64 0.801±0.26 0.249±0.05 2.820±1.31 1.675±1.20 0.752±0.28
ENSMUST00000161895 N/A 0.840±0.58 N/A N/A N/A N/A 0.210±0.00 N/A N/A N/A N/A 2.122±0.47 N/A 0.361±0.00
ENSMUST00000162278 N/A N/A N/A 0.218±0.00 0.381±0.00 N/A 0.566±0.00 N/A N/A 0.609±0.08 N/A 0.884±0.00 0.218±0.00 0.185±0.03
ENSMUST00000162817 N/A 0.501±0.00 N/A N/A N/A N/A N/A N/A N/A N/A 0.136±0.00 N/A N/A N/A
ENSMUST00000179394 2.681±0.84 2.030±0.90 2.959±0.00 1.406±0.49 2.091±0.78 1.751±0.86 0.888±0.45 5.154±0.86 1.883±1.02 0.862±0.00 0.244±0.15 3.463±2.12 1.159±0.00 2.475±0.00
ENSMUSG00000089686 ENSMUST00000162462 N/A N/A N/A 0.038±0.00 N/A N/A 0.090±0.00 0.164±0.08 0.172±0.21 N/A N/A 0.074±0.02 N/A 0.172±0.05
ENSMUSG00000089795 ENSMUST00000162465 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A 0.016±0.01 N/A
ENSMUSG00000089833 ENSMUST00000160149 N/A N/A 0.015±0.00 0.015±0.00 N/A N/A N/A 0.021±0.00 N/A N/A N/A 0.018±0.00 0.026±0.00 0.931±0.38
ENSMUSG00000097898 ENSMUST00000180444 N/A N/A 0.011±0.00 0.028±0.00 N/A N/A 0.057±0.00 N/A 0.008±0.00 0.182±0.00 N/A N/A N/A 12.669±0.00
ENSMUST00000181914 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A

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