C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Transcript Info
Description: calnexin
Transcript Accession Transcript Name Contained in Gene Tax ID Strand Position Biotype
ENST00000504734 CANX-002 ENSG00000127022 9606 + 5:179698417-179728907 protein_coding

Expression Patterns

Heat Map
Numeric Values
Transcript'; AdiposeBladderBrainBreastColonHeartKidneyLiverLungMuscleOvaryTestisENST00000504734
Transcript ID Adipose Bladder Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Testis
ENST00000504734 53.137±0.00 19.966±0.00 37.117±26.78 30.655±3.71 66.098±0.00 7.556±0.00 26.175±0.00 27.162±0.00 16.593±0.00 21.276±0.00 35.542±16.64 54.592±0.00

Conserved Regions

Gene is not located within a conserved region.

Gene Ontology

GO IDEvidence TypeGO Description
GO:0002474 TAS antigen processing and presentation of peptide antigen via MHC class I
GO:0005509 IEA calcium ion binding
GO:0005515 IPI:IEA protein binding
GO:0005783 IDA:IEA endoplasmic reticulum
GO:0005788 TAS endoplasmic reticulum lumen
GO:0005789 IDA endoplasmic reticulum membrane
GO:0006457 TAS:IEA protein folding
GO:0009306 TAS protein secretion
GO:0016020 IDA membrane
GO:0018279 TAS protein N-linked glycosylation via asparagine
GO:0019886 TAS antigen processing and presentation of exogenous peptide antigen via MHC class II
GO:0030246 IEA carbohydrate binding
GO:0043687 TAS post-translational protein modification
GO:0044233 IDA ER-mitochondrion membrane contact site
GO:0044267 TAS cellular protein metabolic process
GO:0044822 IDA poly(A) RNA binding
GO:0048488 ISS synaptic vesicle endocytosis
GO:0051082 IEA unfolded protein binding
GO:0070062 IDA extracellular vesicular exosome
GO:0071556 TAS integral component of lumenal side of endoplasmic reticulum membrane
GO:0072583 ISS clathrin-mediated endocytosis

Homologs

ENSEMBL Accession Gene Name Biotype Species E-Value Bit Score
ENSMUST00000179865 Canx-201 protein_coding Mus_musculus 0 2477
ENSMUST00000020637 Canx-001 protein_coding Mus_musculus 0 2477
ENSMUST00000146979 Canx-003 processed_transcript Mus_musculus 0 804
ENSMUST00000155801 Canx-004 processed_transcript Mus_musculus 0 438
ENSMUST00000153068 Canx-002 processed_transcript Mus_musculus 1e-34 152
ENSDART00000113115 calr-202 protein_coding Danio_rerio 0.00000002 66
ENSDART00000111557 calr-201 protein_coding Danio_rerio 0.00000002 66
ENSDART00000063525 calr-001 protein_coding Danio_rerio 0.00000002 66

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