C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Transcript Info
Description: short coiled-coil protein
Transcript Accession Transcript Name Contained in Gene Tax ID Strand Position Biotype
ENST00000506597 SCOC-004 ENSG00000153130 9606 + 4:140373536-140382545 protein_coding

Expression Patterns

Heat Map
Numeric Values
Transcript'; AdrenalBrainBreastColonHeartKidneyLiverLungPlacentaENST00000506597
Transcript ID Adrenal Brain Breast Colon Heart Kidney Liver Lung Placenta
ENST00000506597 2.915±0.00 6.763±0.00 3.773±2.85 3.427±0.00 0.749±0.00 8.836±0.00 2.300±0.00 6.211±0.00 1.624±0.00

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_00046O CIL_00046O_0002 CGP 4:139716753-140385726
CIL_0006MV CIL_0006MV_0002 CGP 4:140257286-140427968

Gene Ontology

GO IDEvidence TypeGO Description
GO:0005515 IPI protein binding
GO:0005768 IDA endosome
GO:0005802 IDA trans-Golgi network
GO:0016020 IEA membrane
GO:0016239 IDA positive regulation of macroautophagy

Homologs

ENSEMBL Accession Gene Name Biotype Species E-Value Bit Score
ENSMUST00000167525 Scoc-202 protein_coding Mus_musculus 0 422
ENSMUST00000081506 Scoc-201 protein_coding Mus_musculus 0 422
ENSMUST00000172475 Gm7335-001 processed_pseudogene Mus_musculus 0 209

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