C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Transcript Info
Description: msh homeobox 2
Transcript Accession Transcript Name Contained in Gene Tax ID Strand Position Biotype
ENST00000507785 MSX2-002 ENSG00000120149 9606 + 5:174724602-174729880 protein_coding

Homo sapiens EnsemblGRCh38

Genome
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Genes
Structures from Ensembl
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Transcripts
Structures from Ensembl
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Expression Patterns

Heat Map
Numeric Values
Transcript'; BrainBreastColonHeartLungMuscleOvaryPlacentaTestisENST00000507785
Transcript ID Brain Breast Colon Heart Lung Muscle Ovary Placenta Testis
ENST00000507785 0.368±0.19 0.648±0.00 0.303±0.06 0.322±0.30 0.336±0.00 0.371±0.00 0.702±0.00 21.988±6.67 1.163±0.00

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_00086T CIL_00086T_0001 VISTA 5:174433171-175034831

Gene Ontology

GO IDEvidence TypeGO Description
No GO terms available.

Homologs

ENSEMBL Accession Gene Name Biotype Species E-Value Bit Score
ENSMUST00000021922 Msx2-001 protein_coding Mus_musculus 0 686
ENSMUST00000188606 Msx2-002 retained_intron Mus_musculus 0 440
ENSMUST00000047793 Hoxd1-001 protein_coding Mus_musculus 0.000006 57

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